View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3424_high_11 (Length: 328)

Name: NF3424_high_11
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3424_high_11
NF3424_high_11
[»] chr1 (20 HSPs)
chr1 (107-315)||(23987486-23987694)
chr1 (138-286)||(12944061-12944205)
chr1 (109-263)||(10927112-10927258)
chr1 (107-294)||(28660739-28660918)
chr1 (107-278)||(31915465-31915630)
chr1 (110-314)||(10925659-10925853)
chr1 (107-263)||(43681373-43681528)
chr1 (202-286)||(8931225-8931309)
chr1 (202-294)||(13443980-13444072)
chr1 (138-276)||(50713658-50713792)
chr1 (202-286)||(50857444-50857528)
chr1 (143-275)||(10928239-10928367)
chr1 (107-193)||(9199304-9199389)
chr1 (142-274)||(8967815-8967944)
chr1 (110-196)||(21903671-21903755)
chr1 (138-233)||(8221433-8221524)
chr1 (140-196)||(33152805-33152863)
chr1 (107-188)||(9195036-9195115)
chr1 (138-276)||(239632-239766)
chr1 (138-189)||(9030961-9031013)
[»] chr2 (25 HSPs)
chr2 (107-315)||(33051534-33051736)
chr2 (110-274)||(23457563-23457723)
chr2 (107-294)||(36647206-36647389)
chr2 (107-275)||(5171596-5171758)
chr2 (202-291)||(2155972-2156061)
chr2 (202-315)||(27956125-27956238)
chr2 (202-315)||(31634109-31634222)
chr2 (202-286)||(27952318-27952402)
chr2 (112-198)||(36615127-36615215)
chr2 (201-287)||(31636341-31636427)
chr2 (202-287)||(22011441-22011526)
chr2 (138-296)||(32163762-32163916)
chr2 (202-287)||(33655633-33655717)
chr2 (202-278)||(15129395-15129470)
chr2 (126-276)||(12966409-12966555)
chr2 (118-196)||(36648890-36648970)
chr2 (107-286)||(1518106-1518281)
chr2 (202-313)||(28737911-28738020)
chr2 (110-275)||(21772293-21772452)
chr2 (138-282)||(4184873-4185014)
chr2 (138-262)||(32161993-32162114)
chr2 (138-189)||(28737782-28737833)
chr2 (110-181)||(1218388-1218457)
chr2 (107-195)||(18945871-18945962)
chr2 (148-189)||(19582065-19582106)
[»] chr7 (29 HSPs)
chr7 (107-286)||(4888686-4888866)
chr7 (202-315)||(13886130-13886243)
chr7 (138-315)||(8916349-8916521)
chr7 (107-276)||(1369721-1369884)
chr7 (107-276)||(11000836-11000999)
chr7 (138-274)||(5934549-5934681)
chr7 (107-196)||(2767844-2767934)
chr7 (133-274)||(30217753-30217890)
chr7 (107-262)||(11228897-11229046)
chr7 (107-276)||(1786599-1786763)
chr7 (202-286)||(859156-859240)
chr7 (202-286)||(1217160-1217244)
chr7 (202-286)||(13882686-13882770)
chr7 (150-251)||(24840100-24840197)
chr7 (109-260)||(6451776-6451921)
chr7 (107-235)||(3778759-3778889)
chr7 (110-190)||(8063888-8063966)
chr7 (202-294)||(1874543-1874635)
chr7 (110-232)||(35814790-35814906)
chr7 (202-294)||(1220432-1220524)
chr7 (150-251)||(27142623-27142720)
chr7 (110-196)||(1690217-1690301)
chr7 (138-189)||(4955957-4956008)
chr7 (202-292)||(1883494-1883584)
chr7 (138-315)||(1365616-1365788)
chr7 (202-263)||(27309638-27309699)
chr7 (165-286)||(7803031-7803148)
chr7 (143-189)||(18790265-18790311)
chr7 (138-178)||(11228665-11228705)
[»] chr8 (28 HSPs)
chr8 (107-294)||(2189714-2189896)
chr8 (202-309)||(42891641-42891748)
chr8 (138-276)||(2687687-2687821)
chr8 (107-294)||(26374814-26374996)
chr8 (154-286)||(24731188-24731316)
chr8 (202-315)||(22512017-22512130)
chr8 (202-315)||(22519317-22519430)
chr8 (138-276)||(14130110-14130244)
chr8 (133-287)||(24730972-24731122)
chr8 (110-195)||(26377949-26378033)
chr8 (202-315)||(42890397-42890508)
chr8 (148-275)||(20693754-20693877)
chr8 (202-291)||(22926643-22926732)
chr8 (202-286)||(22921850-22921934)
chr8 (202-278)||(23570589-23570665)
chr8 (202-287)||(6845341-6845426)
chr8 (246-315)||(18180684-18180753)
chr8 (138-309)||(16598193-16598361)
chr8 (107-188)||(30440653-30440732)
chr8 (202-308)||(37189871-37189977)
chr8 (107-196)||(16598082-16598169)
chr8 (138-188)||(24577622-24577672)
chr8 (202-286)||(22520799-22520883)
chr8 (112-168)||(2188457-2188513)
chr8 (170-263)||(18468626-18468714)
chr8 (150-259)||(24578804-24578909)
chr8 (139-198)||(25479489-25479548)
chr8 (138-188)||(30442472-30442522)
[»] chr4 (17 HSPs)
chr4 (138-317)||(13991349-13991523)
chr4 (138-315)||(7634025-7634197)
chr4 (107-278)||(21433571-21433735)
chr4 (138-270)||(22486792-22486918)
chr4 (202-287)||(6659330-6659414)
chr4 (138-251)||(10494848-10494957)
chr4 (133-287)||(40206088-40206238)
chr4 (138-251)||(38888025-38888134)
chr4 (109-234)||(9260490-9260610)
chr4 (138-196)||(13990763-13990821)
chr4 (155-196)||(50519231-50519272)
chr4 (163-276)||(17254893-17255002)
chr4 (202-285)||(7723665-7723746)
chr4 (237-287)||(24667696-24667746)
chr4 (138-195)||(28897915-28897973)
chr4 (148-189)||(18689614-18689655)
chr4 (202-286)||(19935492-19935575)
[»] chr6 (19 HSPs)
chr6 (138-286)||(27822118-27822263)
chr6 (110-286)||(33615504-33615678)
chr6 (202-290)||(3536039-3536127)
chr6 (202-289)||(3542250-3542337)
chr6 (107-198)||(18727929-18728019)
chr6 (155-294)||(8048958-8049092)
chr6 (202-291)||(30049921-30050010)
chr6 (138-271)||(11658876-11659005)
chr6 (107-198)||(32361284-32361374)
chr6 (202-278)||(29340814-29340890)
chr6 (137-276)||(12882066-12882202)
chr6 (202-291)||(30052208-30052297)
chr6 (107-180)||(14216810-14216882)
chr6 (109-196)||(24443157-24443242)
chr6 (107-190)||(34373878-34373959)
chr6 (237-286)||(29342063-29342113)
chr6 (234-315)||(18718171-18718252)
chr6 (138-263)||(1127199-1127320)
chr6 (204-276)||(18727115-18727186)
[»] chr3 (13 HSPs)
chr3 (133-286)||(2472689-2472838)
chr3 (202-315)||(43306643-43306756)
chr3 (202-286)||(43303960-43304044)
chr3 (107-286)||(365593-365766)
chr3 (222-296)||(3068865-3068939)
chr3 (205-276)||(52708852-52708923)
chr3 (202-286)||(5128914-5128998)
chr3 (107-194)||(8536461-8536546)
chr3 (133-196)||(1320135-1320198)
chr3 (202-287)||(3063736-3063821)
chr3 (170-263)||(45168343-45168434)
chr3 (202-276)||(35908496-35908569)
chr3 (141-198)||(2107938-2107994)
[»] chr5 (7 HSPs)
chr5 (115-260)||(18252340-18252479)
chr5 (202-294)||(21848957-21849049)
chr5 (110-276)||(8456389-8456554)
chr5 (144-276)||(26140294-26140422)
chr5 (142-276)||(22440806-22440936)
chr5 (202-286)||(40778786-40778870)
chr5 (148-263)||(19497327-19497439)
[»] scaffold0110 (2 HSPs)
scaffold0110 (170-291)||(46728-46846)
scaffold0110 (202-278)||(45270-45346)
[»] scaffold0251 (1 HSPs)
scaffold0251 (138-196)||(9647-9705)
[»] scaffold0330 (1 HSPs)
scaffold0330 (107-263)||(17555-17705)
[»] scaffold0240 (2 HSPs)
scaffold0240 (138-263)||(1602-1723)
scaffold0240 (138-189)||(15992-16043)
[»] scaffold0531 (1 HSPs)
scaffold0531 (202-294)||(11581-11672)
[»] scaffold0090 (1 HSPs)
scaffold0090 (139-189)||(15157-15207)
[»] scaffold0024 (1 HSPs)
scaffold0024 (112-177)||(144022-144085)
[»] scaffold0054 (1 HSPs)
scaffold0054 (140-273)||(37659-37786)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 107 - 315
Target Start/End: Original strand, 23987486 - 23987694
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23987486 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctggtggattccggaaccttctatattt 23987585  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagattt 306  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||    
T  23987586 tcacaagtttgtcgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgaattgcgtcagttggtattaaagcaggttt 23987685  T
Q  307 ctcttgttc 315  Q
    |||||||||    
T  23987686 ctcttgttc 23987694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 138 - 286
Target Start/End: Original strand, 12944061 - 12944205
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| ||||||||| |||||     |||||| ||||||||| |||||||||| |||||  |    
T  12944061 ttttattcattcaatattattttagagagttttctcaatttctggtggattccagaacc----ctatttttacaagtttgtcgtttgcaaacttgtttct 12944156  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtca 286  Q
    |||| |||||| || ||||||||||| ||||||||| ||| ||||||||    
T  12944157 tttcaatctagatttagcgcttgctagcctacgctttcgtgttgcgtca 12944205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 263
Target Start/End: Original strand, 10927112 - 10927258
Alignment:
Q  109 cttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttc 208  Q
    ||||||| ||||||| |||||||||  | ||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||||       |||||    
T  10927112 cttaacaattgtagcctaagagaca--acttttattcattaaataatattttagagagttttctcaatttctggtggattccggaacc------cttttc 10927203  T
Q  209 acaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta 263  Q
    ||||||||| || ||||||| ||||||||||||  |||||||| |||| ||||||    
T  10927204 acaagtttgtcgcttgcaaacttgttctttttcagtctaggtttagcgtttgcta 10927258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 294
Target Start/End: Complemental strand, 28660918 - 28660739
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaa-tttctagtggattccggaaccttctatatt 205  Q
    ||||||||||||||||  |||||||    | ||||||| | ||||||||||||||||||||| ||| || ||||| ||||||| |||||||     ||||    
T  28660918 agcttaacagttgtagactaagaga----acttttattaattcaataatattttagagagttttctaaattttctggtggatttcggaacc----ctatt 28660827  T
Q  206 ttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtat 294  Q
    |||||||||||| || ||||||| |||||  || |||||||||||| |||| |||||| |||||||||||| | | |||||||||||||    
T  28660826 ttcacaagtttgtcgcttgcaaacttgtttcttatctatctaggtttagcgtttgctatcctacgcttccg-actacgtcagttggtat 28660739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 31915465 - 31915630
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatatt 205  Q
    |||||||||| |||||| |||||||  ||| ||||||||||||| || |||||||||||| || ||||||||||| |||||||||||||||     ||||    
T  31915465 agcttaacagatgtagcctaagaga--taacttttattcaatcagtagtattttagagagtttttctcaatttctggtggattccggaacc----ctatt 31915558  T
Q  206 ttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgta 278  Q
    |||||||||||| || ||||||| ||||| | |||| | ||| ||| || |||||||| ||| ||||||||||    
T  31915559 ttcacaagtttgtcgcttgcaaacttgtt-tctttcaacctaagtttagtgcttgctagcctgcgcttccgta 31915630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 314
Target Start/End: Original strand, 10925659 - 10925853
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttca 209  Q
    |||||||||||||| ||||||  |  | ||||||||| ||||||||||||||||||||| | |||||||   ||||||||| |||||    ||||||| |    
T  10925659 ttaacagttgtagcttaagaggaa--acttttattcattcaataatattttagagagttttttcaattttcggtggattccagaacc----atattttta 10925752  T
Q  210 caagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagatttctc 309  Q
    |||||||| || ||||||| |||   |||||| || |||||| ||||||||||| ||| |||||||| | |||||| ||| |||| |||| || ||||||    
T  10925753 caagtttgtcgcttgcaaaattg---tttttcaatttaggtttagcgcttgctagcctccgcttccg-actgcgtctgttagtatcaaagcaggtttctc 10925848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 263
Target Start/End: Original strand, 43681373 - 43681528
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatatttt-agag-agttatctcaatttctagtggattccggaaccttctatat 204  Q
    ||||||||||||||||| ||| |||  ||| ||||||||| ||||||||||||| |||| |||| ||| ||||||| || ||||| |||    ||| |||    
T  43681373 agcttaacagttgtagcctaatagatgtaacttttattcattcaataatattttaagagaagttttcttaatttctggtagattctgga----tctctat 43681468  T
Q  205 tttcacaagtttgacgtttgcaaagttg-ttctttttctatctaggttcagcgcttgcta 263  Q
    |||||||| |||| || ||||||| ||| || |||||| ||||||||| |||||||||||    
T  43681469 tttcacaaatttgtcgcttgcaaacttgtttttttttcaatctaggtttagcgcttgcta 43681528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 8931225 - 8931309
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||  || ||||||| ||||| |||||| ||||||||| |||||||||| |||||||||||||||| |||||||    
T  8931225 tattttcacaagtttatcgcttgcaaacttgtt-tttttcaatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 8931309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 13444072 - 13443980
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttggtat 294  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| || ||||| | |||||| ||||||| | |||||||||||||||    
T  13444072 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagtgcttgttaaccctatgcttccgaactgcgtcagttggtat 13443980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 50713658 - 50713792
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| ||||     |||||||||||||||| ||  ||| || ||||   |    
T  50713658 ttttattcattcaataatatttttgagagttttctcaatttctggtggattccgaaacc----ctattttcacaagtttgtcgcctgcgaacttgtctct 50713753  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    |||| ||||||||| |||| ||| || |||||| |||||    
T  50713754 tttcaatctaggtttagcggttgttagcctacgtttccg 50713792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 50857528 - 50857444
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||| || || |||| || ||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||    
T  50857528 tattttcacaagtttgtcgcttacaaacttattctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 50857444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 10928239 - 10928367
Alignment:
Q  143 ttcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgt-tctttttc 241  Q
    |||| |||||| |||||||||||||| ||||||||| |||||||||||| |||||    |||||||||||||||| |  || |||| || | |||||||     
T  10928239 ttcattcaatagtattttagagagttttctcaatttatagtggattccgaaacct----tattttcacaagtttgtcacttacaaacttatatcttttt- 10928333  T
Q  242 tatctaggttcagcgcttgctaccctacgcttcc 275  Q
     ||||||||| ||| ||||||| |||||||||||    
T  10928334 aatctaggtttagcacttgctagcctacgcttcc 10928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 9199389 - 9199304
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccgga 193  Q
    ||||||||| ||||||| |||||| || || ||||||||  ||||||||||||||||||||| | ||||||||| |||| |||||||    
T  9199389 agcttaacatttgtagcctaagaggca-aacttttattctttcaataatattttagagagttttttcaatttcttgtggcttccgga 9199304  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 8967944 - 8967815
Alignment:
Q  142 attcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttt-t 240  Q
    ||||| |||||||||||| |||||||| || |||||| | |||||||| ||||||     |||||||| | ||||| | |||||||| |||||||||| |    
T  8967944 attcattcaataatatttcagagagttttcacaatttttggtggattctggaacc----ctattttcataggtttgtcatttgcaaacttgttcttttct 8967849  T
Q  241 ctatctaggttcagcgcttgctaccctacgcttc 274  Q
    ||||||||||| | ||||||| | ||| ||||||    
T  8967848 ctatctaggtttaacgcttgcgagccttcgcttc 8967815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 21903671 - 21903755
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacc 196  Q
    |||||||||||||| ||||||||  |||||||| ||| | ||||||| |||||| |||| ||||||||| | |||||||||| ||||    
T  21903671 ttaacagttgtagcttaagagac--aaattttactcacttaataatagtttagaaagttttctcaattttttgtggattccgaaacc 21903755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 8221433 - 8221524
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgt 233  Q
    ||||||||| ||||| |||||| | |||||| ||||||||||| ||||||||| |||||     |||||||| ||||||| |||||||||| ||||    
T  8221433 ttttattcattcaatgatatttcaaagagttttctcaatttctggtggattccagaacc----ctattttcataagtttgtcgtttgcaaacttgt 8221524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 33152863 - 33152805
Alignment:
Q  140 ttattcaatcaataatattttagagag--ttatctcaatttctagtggattccggaacc 196  Q
    |||||||||||||||||||||| ||||  || ||| ||||||| |||||||||||||||    
T  33152863 ttattcaatcaataatattttatagagttttttcttaatttctggtggattccggaacc 33152805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 9195115 - 9195036
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggatt 188  Q
    ||||||||| ||||||| ||||||||   | ||||||||| ||||||||| ||||||||||| | ||||||| | |||||||    
T  9195115 agcttaacatttgtagcctaagagacg--acttttattcattcaataatactttagagagttttttcaatttttggtggatt 9195036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 239632 - 239766
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| | ||||||||||||||| ||| ||| ||||||   ||||||||||||||     |||||||| || ||||||| |||| || |||||  |    
T  239632 ttttattcatttaataatattttagagggttttcttaatttcagttggattccggaacc----ctattttcataaatttgacgcttgctaacttgtttct 239727  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    |||  || || ||| ||| ||||||| ||||||||||||    
T  239728 ttttaatataagtttagcccttgctagcctacgcttccg 239766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 9030961 - 9031013
Alignment:
Q  138 ttttattcaatcaataatattttagag-agttatctcaatttctagtggattc 189  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| | ||||||||    
T  9030961 ttttattcattcaataatattttagagaagttttctcaatttatggtggattc 9031013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 107 - 315
Target Start/End: Original strand, 33051534 - 33051736
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    ||||||||| ||||||  |||||||||  | || |||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||     |||||    
T  33051534 agcttaacaattgtagtctaagagaca--acttatattcattcaataatattttagagagttttctcaatttctagtggattccagaacc----ctattt 33051627  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagattt 306  Q
    ||| ||||||| || ||||||| |||||||||||| || |||||| ||||||||||| |||| ||||||||| | ||||||||||||| | || || |||    
T  33051628 tcaaaagtttgtcgcttgcaaacttgttctttttcaatttaggtttagcgcttgctagcctaagcttccgtactacgtcagttggtatcagagcaggttt 33051727  T
Q  307 ctcttgttc 315  Q
    ||| |||||    
T  33051728 ctcctgttc 33051736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 23457563 - 23457723
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttca 209  Q
    |||||| ||||||| |||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||     ||||||||    
T  23457563 ttaacaattgtagcctaagagacttaacttttattcattcaataatattttagagagttttctcaatttttggtggattccggaacc----ctattttca 23457658  T
Q  210 caagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttc 274  Q
    |||||||| || ||||||| |||||  ||||| ||||||||| ||||||||||| ||||| ||||    
T  23457659 caagtttgtcgcttgcaaacttgtttattttcaatctaggtttagcgcttgctagcctacacttc 23457723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 107 - 294
Target Start/End: Original strand, 36647206 - 36647389
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatc-tcaatttctagtggattccggaaccttctatatt 205  Q
    |||||||||| |||| | |||||| ||||| ||||||||||||||||||| |||||||  || || ||| ||| | |||||||||  |||| |    |||    
T  36647206 agcttaacagatgtaacctaagaggcataacttttattcaatcaataatactttagagttttttcctcattttttggtggattccaaaaccct----att 36647301  T
Q  206 ttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtat 294  Q
    |||||||||||| || ||||||| |||||||||| | ||| ||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  36647302 ttcacaagtttgtcgcttgcaaacttgttctttt-caatcgaggtttagcgcttgctagcctacgcttccgtactgcgtcagttggtat 36647389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 275
Target Start/End: Complemental strand, 5171758 - 5171596
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    ||||||||||||||||  |||||||||  | ||||||||| | ||||||||||||||||||| ||||||||||||||||||||  |||||     |||||    
T  5171758 agcttaacagttgtagtctaagagaca--atttttattcattaaataatattttagagagttttctcaatttctagtggattcttgaacc----ctattt 5171665  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttcc 275  Q
    | ||||||||| || ||||||| ||||   ||||| |||||| || |||||||| || |||||||||||    
T  5171664 ttacaagtttgtcgcttgcaaacttgtctcttttcaatctagatttagcgcttgttaacctacgcttcc 5171596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 2155972 - 2156061
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta-ccctacgcttccgtattgcgtcagttgg 291  Q
    |||||||||||||||| || | ||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  2155972 tattttcacaagtttgtcgctcgcaaacttgttctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcagttgg 2156061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 27956238 - 27956125
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta-ccctacgcttccgtattgcgtcagttggtattaaagt 300  Q
    |||||||| | ||||| || ||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| | ||     
T  27956238 tattttcataggtttgtcgcttgcaaacttgttctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcagttggtatcagagc 27956140  T
Q  301 agatttctcttgttc 315  Q
    || |||||| |||||    
T  27956139 aggtttctcctgttc 27956125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 31634109 - 31634222
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta-ccctacgcttccgtattgcgtcagttggtattaaagt 300  Q
    |||||||||||||||| || | ||||| |||||||||| ||||||||||| |||| |||||| ||||||||||||||| ||||||||||||||| | ||     
T  31634109 tattttcacaagtttgtcgctagcaaacttgttctttt-ctatctaggtttagcgtttgctaaccctacgcttccgtactgcgtcagttggtatcatagc 31634207  T
Q  301 agatttctcttgttc 315  Q
    || |||||| |||||    
T  31634208 aggtttctcctgttc 31634222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 27952402 - 27952318
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  27952402 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 27952318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 36615127 - 36615215
Alignment:
Q  112 aacagttgtagcgtaagagacataaattttattcaatcaataatattttagagag--ttatctcaatttctagtggattccggaacctt 198  Q
    ||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||  || ||| ||||||| |||||||||||||||||    
T  36615127 aacagatgtagcctaagaggcataacttttattcaatcaataatattttagagagttttttcttaatttctggtggattccggaacctt 36615215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 31636341 - 31636427
Alignment:
Q  201 atattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcag 287  Q
    ||||||||||||||||| || ||||||| | |||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  31636341 atattttcacaagtttgtcgcttgcaaactagttc-ttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcag 31636427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 22011441 - 22011526
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcag 287  Q
    |||||||||||||||| |  ||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  22011441 tattttcacaagtttgtcacttgcaaacttgttctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcag 22011526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 296
Target Start/End: Complemental strand, 32163916 - 32163762
Alignment:
Q  138 ttttattcaatcaataatattttagaga-gttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttct 236  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| |  ||||||||| ||||    |||||||||||||||||||| || |||| || ||      
T  32163916 ttttattcattcaataatattttagagaagttttctcaatttatcatggattccgaaacc----atattttcacaagtttgacgcttacaaacttatttc 32163821  T
Q  237 ttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtatta 296  Q
    ||||| ||||||||| | ||||| ||| ||| |||||| | | |||||||||||||||||    
T  32163820 ttttcaatctaggtttaacgctttctagccttcgcttctg-actgcgtcagttggtatta 32163762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 33655633 - 33655717
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcag 287  Q
    |||||||||||||||| || ||||||| ||||  |||||||||||||||| ||||||||||| ||||| |||||||| ||||||||    
T  33655633 tattttcacaagtttgtcgcttgcaaacttgta-tttttctatctaggtttagcgcttgctaacctacacttccgtactgcgtcag 33655717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 15129395 - 15129470
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgta 278  Q
    |||||||||||||||| || |||| || |||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  15129395 tattttcacaagtttgtcgcttgcgaacttgttctttt-ctatctaggtttagcgcttgctagcctacgcttccgta 15129470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 276
Target Start/End: Original strand, 12966409 - 12966555
Alignment:
Q  126 aagagacataaattttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttg 224  Q
    ||||| ||||| ||||||||||||||||||||||||||||| || ||||||||| | ||||||| |||||||     |||||||||||||| | || |||    
T  12966409 aagaggcataacttttattcaatcaataatattttagagagtttttctcaatttttggtggatttcggaacc----ctattttcacaagttcgtcgcttg 12966504  T
Q  225 caaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    | || |||||| ||||| |||||| || | || |||||| |||| |||||||    
T  12966505 cgaacttgttc-ttttcaatctagatttaacgtttgctagcctatgcttccg 12966555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 36648890 - 36648970
Alignment:
Q  118 tgtagcgtaagagacataaattttattcaatcaataatattttagagag--ttatctcaatttctagtggattccggaacc 196  Q
    |||||| |||||| ||||| |||||||||||||||||||||||||||||  || ||| ||||||| ||||||||| |||||    
T  36648890 tgtagcctaagaggcataacttttattcaatcaataatattttagagagttttttcttaatttctggtggattccagaacc 36648970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 286
Target Start/End: Original strand, 1518106 - 1518281
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttat---ctcaatttctagtggattccggaaccttctata 203  Q
    ||||||||||||||| | |||||||  ||| || |||||||| |||||||||||||| |||| |   |||||||||||||||||| |||||||     ||    
T  1518106 agcttaacagttgtaacctaagaga--taacttatattcaataaataatattttagaaagtttttttctcaatttctagtggatttcggaacc----cta 1518199  T
Q  204 ttttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtca 286  Q
    |||||| ||||| | || |||| || ||| ||  |||| ||||||||| |||||||||||   |||||||||||| |||||||    
T  1518200 ttttcataagttcgtcgcttgcgaacttg-tccctttcaatctaggttaagcgcttgctaggatacgcttccgtactgcgtca 1518281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 28737911 - 28738020
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagta 301  Q
    |||||||| ||||||| || ||||||| ||| |||||| | ||||||||| ||| |||||||  ||||||||||| | ||||||||||||||| | || |    
T  28737911 tattttcaaaagtttgtcgcttgcaaacttgctctttt-caatctaggtttagcacttgctagactacgcttccg-actgcgtcagttggtatcagagca 28738008  T
Q  302 gatttctcttgt 313  Q
    ||||||||||||    
T  28738009 gatttctcttgt 28738020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 275
Target Start/End: Original strand, 21772293 - 21772452
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattt-tagagagttatctcaatttctagtggattccggaaccttctatattttc 208  Q
    |||||||||||||| ||||||  |||| ||||||||  ||||||||||||  |||||||| ||||||||| |  ||||||| ||||||     |||||||    
T  21772293 ttaacagttgtagcttaagag--ataacttttattcgttcaataatatttcaagagagttttctcaatttgtgatggattcaggaacc----ctattttc 21772386  T
Q  209 acaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttcc 275  Q
    | ||||||| || ||||||| ||||| |||||| ||||| ||| |||| | |||| |||||||||||    
T  21772387 ataagtttgtcgcttgcaaacttgtt-tttttcaatctaagtttagcgttggctaacctacgcttcc 21772452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 282
Target Start/End: Original strand, 4184873 - 4185014
Alignment:
Q  138 ttttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttct 236  Q
    ||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| ||||     |||||||||||||||| || |||| || || ||      
T  4184873 ttttattcattcaataatattttagagagtttttctcaatttctcgtggattccgaaacc----ctattttcacaagtttgtcgcttgcgaacttatttc 4184968  T
Q  237 ttttctatctaggttcagcgcttgctaccctacgcttccgtattgc 282  Q
    ||||  |||||  || ||  |||| || ||||||||||||||||||    
T  4184969 ttttgaatctatatttagtacttgttagcctacgcttccgtattgc 4185014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 32162114 - 32161993
Alignment:
Q  138 ttttattcaatcaataatattttagag-agttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttct 236  Q
    ||||||| | ||||||||||||||||| |||| ||||| ||||| ||||||||| |||||     |||||||||||||||| |  ||||||| |||||      
T  32162114 ttttatttattcaataatattttagagaagttttctcagtttctggtggattcctgaacc----ctattttcacaagtttgtcacttgcaaacttgtttc 32162019  T
Q  237 ttttctatctaggttcagcgcttgct 262  Q
    ||||| ||||||||| | ||||||||    
T  32162018 ttttcgatctaggtttaacgcttgct 32161993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 28737782 - 28737833
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattc 189  Q
    ||||||||| ||||||||||||||||||||| |||||||||||  |||||||    
T  28737782 ttttattcattcaataatattttagagagttttctcaatttctgttggattc 28737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 1218457 - 1218388
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttcta 181  Q
    |||| ||||||||  |||||||||  | ||||||||| |||||||||||||||||| || ||||||||||||    
T  1218457 ttaaaagttgtagtataagagaca--acttttattcattcaataatattttagagaattttctcaatttcta 1218388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 18945871 - 18945962
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaat---tttattcaatcaataatattttagagagttatctcaatttctagtggattccggaac 195  Q
    |||||||||||| |||| |||||| || ||||   ||| |||| |||||||||||||||||| || | | ||||||| ||| ||||||||||    
T  18945871 agcttaacagttttagcctaagaggcaaaaataattttgttcattcaataatattttagagaattttattaatttctggtgaattccggaac 18945962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 19582065 - 19582106
Alignment:
Q  148 tcaataatattttagagagttatctcaatttctagtggattc 189  Q
    ||||||||||||||||||||| | ||||||||||||| ||||    
T  19582065 tcaataatattttagagagttttttcaatttctagtgaattc 19582106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 4888866 - 4888686
Alignment:
Q  107 agcttaacagttgtagcgtaagagaca-----taaattttattcaatcaataatattttagagagt-tatctcaatttctagtggattccggaaccttct 200  Q
    ||||||||||||||| | |||||||||     ||| |||||||||||||||||||||||||||||| | | ||||||||| ||| ||||||||||    |    
T  4888866 agcttaacagttgtatcctaagagacaacttataacttttattcaatcaataatattttagagagtgtttttcaatttctggtgaattccggaac----t 4888771  T
Q  201 atattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtca 286  Q
     |||||||||| ||||| || ||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  4888770 ctattttcacaggtttgtcgcttgcaaacttgttctttt-ctatctaggttcagcgcatgctagcctacgcttccgtattgcgtca 4888686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 13886243 - 13886130
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta-ccctacgcttccgtattgcgtcagttggtattaaagt 300  Q
    |||||||||||||||| || ||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||     
T  13886243 tattttcacaagtttgtcgcttgcaaacttgttctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcagttggtattagagc 13886145  T
Q  301 agatttctcttgttc 315  Q
    || |||||| |||||    
T  13886144 aggtttctcctgttc 13886130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 138 - 315
Target Start/End: Complemental strand, 8916521 - 8916349
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||    || ||||| |||||||||  |||||||||| |||||| |    
T  8916521 ttttattcattcaataatattttagagagttttctcaatttctggtggattccagaa----ctctatttccacaagtttatcgtttgcaaacttgttcat 8916426  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagatttctcttgttc 315  Q
    |||  ||||||||| | ||||| ||| | |||||||| | | ||||||||||||||  | ||||| ||||||||||||    
T  8916425 tttaaatctaggtttaacgcttactagcatacgcttctg-actgcgtcagttggtaacagagtaggtttctcttgttc 8916349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 276
Target Start/End: Original strand, 1369721 - 1369884
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    ||||||| ||||||||| |||||||||  | ||||||| | |||||||||||||| |||||| ||||||||||| |||||||||||||||     |||||    
T  1369721 agcttaatagttgtagcctaagagaca--acttttattaattcaataatattttatagagttttctcaatttctggtggattccggaacc----ctattt 1369814  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    | ||||||||  || ||||||| |||||  ||||| ||||||||| | ||||||||| ||| ||||||||    
T  1369815 taacaagtttatcgcttgcaaacttgtttcttttcaatctaggtttaacgcttgctagcctccgcttccg 1369884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 276
Target Start/End: Complemental strand, 11000999 - 11000836
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    ||||||||||||||||| |||||| ||  | | ||||||| ||||||||||||||||||||| || |||||||| ||||||||| |||||     |||||    
T  11000999 agcttaacagttgtagcttaagaggca--attattattcattcaataatattttagagagttttcccaatttctggtggattcctgaacc----ctattt 11000906  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    |||| |||||| || |||| || |||||  ||||| ||||||||| ||||||||||| ||||| ||||||    
T  11000905 tcactagtttgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgctagcctacacttccg 11000836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 5934549 - 5934681
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| |||||||||||||||||| || |||||||||||| ||||||| | || | |    ||||||||||||||| || ||||||| |||||  |    
T  5934549 ttttattcattcaataatattttagagaattttctcaatttctaatggattctgaaatcct----attttcacaagtttgtcgcttgcaaatttgtttct 5934644  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttc 274  Q
    |||| ||||||||| ||||||||||| ||||||||||    
T  5934645 tttcaatctaggtttagcgcttgctagcctacgcttc 5934681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 2767844 - 2767934
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaacc 196  Q
    ||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||| ||||    
T  2767844 agcttaacagttgtagcctaagagagataacttttattcaattaataatattttagagagtttttctcaatttctggtggattccgaaacc 2767934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 30217753 - 30217890
Alignment:
Q  133 ataaattttattcaatcaataatattttagaga--gttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagt 230  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||| || ||||||| | |||    || |||||||||||||||| || |||| || |    
T  30217753 ataacttttattcaatcaataatattttagagagtgttatctcaattactggtggatttcagaa----ctctattttcacaagtttgtcgcttgcgaact 30217848  T
Q  231 tgttctttttctatctaggttcagcgcttgctaccctacgcttc 274  Q
    |||||  |||| ||||||||| ||||||||||| ||||||||||    
T  30217849 tgttc--tttcaatctaggtttagcgcttgctagcctacgcttc 30217890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 11228897 - 11229046
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    ||||||||| ||||||| |||||| ||  | ||||||||| ||||||||||||||||||||| | ||||||||| |||||||| ||||||     | |||    
T  11228897 agcttaacatttgtagcataagaggca--acttttattcactcaataatattttagagagttttatcaatttctggtggattctggaacc----cttttt 11228990  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct 262  Q
    ||||| ||||| ||  |||||| |||||||||||| ||||||||| ||| ||||||    
T  11228991 tcacacgtttgtcgcctgcaaacttgttctttttcaatctaggtttagcacttgct 11229046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 276
Target Start/End: Original strand, 1786599 - 1786763
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    ||||||||||||||||| ||||||  |  | ||||||||| | ||||||||||||||||||| || ||||||||  ||||||| ||||||     |||||    
T  1786599 agcttaacagttgtagcctaagaggaa--acttttattcattaaataatattttagagagttttcgcaatttctgatggattctggaacc----ctattt 1786692  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccg 276  Q
    || || ||||| || ||||||| ||||| |||||||||||||||| ||| |||||| | ||||||||||||    
T  1786693 tcgcatgtttgtcgcttgcaaacttgttatttttctatctaggtttagcacttgctaatcctacgcttccg 1786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 859240 - 859156
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  859240 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgcttgctaatcctacgcttccgtattgcgtca 859156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 1217244 - 1217160
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  1217244 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgcttgctaatcctacgcttccgtattgcgtca 1217160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 13882770 - 13882686
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  13882770 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 13882686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 24840100 - 24840197
Alignment:
Q  150 aataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctagg 249  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||     |||||||||||||||| || ||||||| |||||  ||||| |||||||    
T  24840100 aataatattttagagagttttctcaatttctggtggattccggaacc----ctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctagg 24840195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 6451921 - 6451776
Alignment:
Q  109 cttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttc 208  Q
    ||||||||||||||| |||||||||  | ||| ||||| ||||||||||||||||||||| | ||||||| |  ||||||||| |||||    |||||||    
T  6451921 cttaacagttgtagcctaagagaca--actttaattcattcaataatattttagagagttttttcaatttttgttggattccgaaacct----tattttc 6451828  T
Q  209 acaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttg 260  Q
    ||| ||||| || ||||||| |||||   |||| |||||| || ||||||||    
T  6451827 acaggtttgtcgcttgcaaacttgtttcctttcaatctagatttagcgcttg 6451776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 3778889 - 3778759
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagag------ttatctcaatttctagtggattccggaaccttct 200  Q
    |||||||| |||||||  ||||||  |||| |||||||||||||||||||||||||||||      || ||||||||||| |||||||||||||||        
T  3778889 agcttaacggttgtagtctaagaggaataacttttattcaatcaataatattttagagagtttaatttttctcaatttctggtggattccggaacc---- 3778794  T
Q  201 atattttcacaagtttgacgtttgcaaagttgttc 235  Q
     |||||||||||||||  || ||||||| ||||||    
T  3778793 ctattttcacaagtttctcgcttgcaaacttgttc 3778759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 8063966 - 8063888
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattcc 190  Q
    |||||||||||||| |||||| |||   ||||||| | |||||||||||||||||| || |||||||||||||||||||||    
T  8063966 ttaacagttgtagcttaagaggcatc--ttttattaattcaataatattttagagaattttctcaatttctagtggattcc 8063888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 1874543 - 1874635
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtat 294  Q
    |||||||||||||||| |||||||||| |||||  ||||| ||| ||||| || | |||||| | |||||||||||| | |||||||||||||    
T  1874543 tattttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaaggtttagtgtttgctaacatacgcttccgtactacgtcagttggtat 1874635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 35814790 - 35814906
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttca 209  Q
    ||||| |||||||| ||||||||   | ||||||||| ||||||||||||||||||||| ||||||||| | || |||||  ||||||    |||||| |    
T  35814790 ttaacggttgtagcttaagagacg--acttttattcattcaataatattttagagagttttctcaatttatggtagattcaagaacct----tattttta 35814883  T
Q  210 caagtttgacgtttgcaaagttg 232  Q
    |||||||| || |||||||||||    
T  35814884 caagtttgtcgcttgcaaagttg 35814906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 1220524 - 1220432
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttggtat 294  Q
    |||||||||||||||| |||||||||| ||||||  ||||||| |||||| |||| ||||| |||||||||||| ||| | ||| |||||||||    
T  1220524 tattttcacaagtttgtcgtttgcaaacttgttc-atttctatgtaggtttagcgtttgctaaccctacgcttctgtactacgttagttggtat 1220432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 27142623 - 27142720
Alignment:
Q  150 aataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctagg 249  Q
    |||||||||| |||||||| ||||||||||| |||| ||| ||||||     |||||||||||||||| || ||||||| |||||  ||||| |||||||    
T  27142623 aataatatttcagagagttttctcaatttctggtggtttcaggaacc----ctattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctagg 27142718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 1690301 - 1690217
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacc 196  Q
    |||||||||||||| |||||||||  | ||||||||| | |||| ||||||||||| || |||||||||||  |||||||| |||||    
T  1690301 ttaacagttgtagcctaagagaca--acttttattcattaaatactattttagagaattttctcaatttctgatggattccagaacc 1690217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 4956008 - 4955957
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattc 189  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||| |||||||    
T  4956008 ttttattcattcaataatattttagggagttttctcaatttctaatggattc 4955957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 1883494 - 1883584
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggt 292  Q
    |||||||||||||||| |||||||||| |||||  ||||| ||||||||| || | |||||| | ||||||| |||| | ||| |||||||    
T  1883494 tattttcacaagtttgtcgtttgcaaacttgtttcttttcaatctaggtttagtgtttgctagcatacgcttacgtactacgttagttggt 1883584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 315
Target Start/End: Original strand, 1365616 - 1365788
Alignment:
Q  138 ttttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttct 236  Q
    ||||||||| ||||||||||||||||||| || ||||||||| | |||||||  ||||||     ||||||||||||||   || || |||| ||||||     
T  1365616 ttttattcattcaataatattttagagagtttttctcaatttttggtggattatggaacc----ctattttcacaagttcatcgcttacaaacttgttc- 1365710  T
Q  237 ttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagatttctcttgttc 315  Q
     |||| ||||||||| ||||||||||| ||||  |||||||| |  |||||||||||| | || || |||||| |||||    
T  1365711 ctttcaatctaggtttagcgcttgctagcctatccttccgtact-agtcagttggtatcagagcaggtttctcctgttc 1365788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 27309699 - 27309638
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta 263  Q
    |||||||||||||||| || ||||||| |||||  ||||| ||||||||| |||||||||||    
T  27309699 tattttcacaagtttgtcgcttgcaaacttgtttcttttcaatctaggtttagcgcttgcta 27309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 7803148 - 7803031
Alignment:
Q  165 agttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctac 264  Q
    |||| |||||| || | |||||||||||||||||    ||||||| |||||||  | ||||||| |||||  ||||| | ||||||| | | |||||||     
T  7803148 agttgtctcaaattatggtggattccggaacctt----attttcataagtttgttgcttgcaaacttgtttcttttcgacctaggtttaacccttgctaa 7803053  T
Q  265 cctacgcttccgtattgcgtca 286  Q
    |||||||||||||| |||||||    
T  7803052 cctacgcttccgtactgcgtca 7803031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 18790311 - 18790265
Alignment:
Q  143 ttcaatcaataatattttagagagttatctcaatttctagtggattc 189  Q
    |||| ||| ||||||||||||||||| ||||||||||| ||||||||    
T  18790311 ttcattcagtaatattttagagagttttctcaatttctggtggattc 18790265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 11228665 - 11228705
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaattt 178  Q
    ||||| ||||||| ||||||||||||||||| |||||||||    
T  11228665 ttttaatcaatcactaatattttagagagttttctcaattt 11228705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 107 - 294
Target Start/End: Complemental strand, 2189896 - 2189714
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    |||||||||| | |||  |||||| ||||| ||||||||||||||||||| |||||||  || ||||| ||| | |||||||||  ||||||    ||||    
T  2189896 agcttaacagatatagtctaagaggcataacttttattcaatcaataatactttagagttttttctcattttttggtggattccaaaacctt----attt 2189801  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtat 294  Q
    ||||||||||| || ||||||| |||||||||| | ||| ||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  2189800 tcacaagtttgtcgcttgcaaacttgttctttt-caatcgaggtttagcgcttgctagcctacgcttccgtactgcgtcagttggtat 2189714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 42891748 - 42891641
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta-ccctacgcttccgtattgcgtcagttggtattaaagt 300  Q
    |||||||||||||||| || ||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||     
T  42891748 tattttcacaagtttgtcgcttgcaaacttgttctttt-ctatctaggtttagcgcttgctagccctacgcttccgtattgcgtcagttggtatcaaagc 42891650  T
Q  301 agatttctc 309  Q
    || ||||||    
T  42891649 aggtttctc 42891641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 2687687 - 2687821
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| |||||||||||| | |||||| ||||||||||| ||||||||  |||||     |||||||||||||||| || ||||||| ||||||||    
T  2687687 ttttattcattcaataatatttcaaagagttttctcaatttcttgtggattctagaacc----ctattttcacaagtttgtcgcttgcaaacttgttctt 2687782  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    |||||||||||||| |||||| ||||  || ||||||||    
T  2687783 tttctatctaggtttagcgctcgctagtcttcgcttccg 2687821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 294
Target Start/End: Original strand, 26374814 - 26374996
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    ||||||||| ||||||| |||||| ||||| ||||||||| ||||||||| ||||||||||| ||| ||||||| ||||||| || ||||     |||||    
T  26374814 agcttaacaattgtagcctaagaggcataacttttattcattcaataataatttagagagttttcttaatttctggtggatttcgaaacc----ctattt 26374909  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtat 294  Q
    | ||||||||| || |||| || |||||| ||||| ||||||| | | ||||||||| | ||||||| | || ||| |||||||||||    
T  26374910 ttacaagtttgtcgcttgcgaacttgttc-ttttcaatctaggcttaacgcttgctagcttacgctttcctactgcatcagttggtat 26374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 154 - 286
Target Start/End: Original strand, 24731188 - 24731316
Alignment:
Q  154 atattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttca 253  Q
    ||||||||||||||| |||||||||||  || |||||| ||    || ||||||||||||||||  | ||||||| |||||| ||||| ||||||||| |    
T  24731188 atattttagagagttttctcaatttctgatgaattccgaaa----ctctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaggttta 24731283  T
Q  254 gcgcttgctaccctacgcttccgtattgcgtca 286  Q
    |||||||||| |||||||| ||||| |||||||    
T  24731284 gcgcttgctagcctacgctcccgtactgcgtca 24731316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 22512130 - 22512017
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttggtattaaagt 300  Q
    |||||||||||||||| || ||||||| |||||| ||||||| ||||||| |||||||||| ||||||| |||||||| ||||||||||||||| | ||     
T  22512130 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctacctaggtttagcgcttgctaaccctacacttccgtactgcgtcagttggtatcagagc 22512032  T
Q  301 agatttctcttgttc 315  Q
    || |||||| |||||    
T  22512031 aggtttctcctgttc 22512017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 22519430 - 22519317
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttggtattaaagt 300  Q
    |||||||||||||||| || ||||||| |||||| ||||||| ||||||| |||||||||| ||||||| |||||||| ||||||||||||||| | ||     
T  22519430 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctacctaggtttagcgcttgctaaccctacacttccgtactgcgtcagttggtatcagagc 22519332  T
Q  301 agatttctcttgttc 315  Q
    || |||||| |||||    
T  22519331 aggtttctcctgttc 22519317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 14130110 - 14130244
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||    ||||||||||| |||  || ||||||| ||||   |    
T  14130110 ttttattcattcaataatattttggagagttttctcaatttctggtggattccggaacct----tattttcacaaatttatcgcttgcaaacttgtctct 14130205  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    |||| |||||| || | ||||||| | ||||||||||||    
T  14130206 tttcgatctagatttaacgcttgcaagcctacgcttccg 14130244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 287
Target Start/End: Original strand, 24730972 - 24731122
Alignment:
Q  133 ataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttg 232  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||| |  ||||||||| || |     ||||||||||||||||  | ||||||| |||    
T  24730972 ataacttttattcattcaataatattttagagagttttctcaatttttgatggattccgaaatc----ctattttcacaagtttgttgcttgcaaacttg 24731067  T
Q  233 ttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcag 287  Q
    ||| ||||| |||||  || ||||||||||| |||||| ||| ||| ||||||||    
T  24731068 ttccttttcaatctaaatttagcgcttgctagcctacggttctgtactgcgtcag 24731122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 26377949 - 26378033
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaac 195  Q
    |||| ||||||||| ||| || ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  26377949 ttaatagttgtagcttaa-aggcataacttttattcattcaataatattttagagagttttctcaatttctagtggattctggaac 26378033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 42890397 - 42890508
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagta 301  Q
    |||||||||||||||| || ||||||| |||||||||| ||||||||||| ||||||||||| ||||||||| |  ||||||||||||||||| | || |    
T  42890397 tattttcacaagtttgtcgcttgcaaacttgttctttt-ctatctaggtttagcgcttgctagcctacgctt-ctaattgcgtcagttggtatcagagca 42890494  T
Q  302 gatttctcttgttc 315  Q
    | |||||| |||||    
T  42890495 ggtttctcctgttc 42890508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 275
Target Start/End: Original strand, 20693754 - 20693877
Alignment:
Q  148 tcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatcta 247  Q
    ||||||||| ||||||||||| |||||||||||  ||||||||||||||    |||||||||||| |||| || ||||||| |||||  ||||| |||||    
T  20693754 tcaataatactttagagagttttctcaatttctgatggattccggaacc----atattttcacaaatttgtcgcttgcaaacttgtttattttcaatcta 20693849  T
Q  248 ggttcagcgcttgctaccctacgcttcc 275  Q
    |||| | | || |||| |||||||||||    
T  20693850 ggtttaaccctcgctagcctacgcttcc 20693877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 22926732 - 22926643
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttgg 291  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| ||||||| || |||||||||||||||| | ||||||||||    
T  22926732 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgctttctaaccctacgcttccgtactacgtcagttgg 22926643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 22921934 - 22921850
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||| || ||||||| || ||||||| ||||||||||| |||||||||| |||||||||||||||| |||||||    
T  22921934 tattttcacaagtttgtcgcttgcaaacttattctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 22921850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 23570589 - 23570665
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgta 278  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  23570589 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgcttgctaaccctacgcttccgta 23570665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 6845341 - 6845426
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcag 287  Q
    |||||||||||||||  || ||| ||| |||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  6845341 tattttcacaagtttatcgcttgtaaacttgttctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcag 6845426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 18180753 - 18180684
Alignment:
Q  246 taggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagatttctcttgttc 315  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| || |||||| |||||    
T  18180753 taggtttagcgcttgctagcctacgcttccgtactgcgtcagttggtatcaaagcaggtttctcctgttc 18180684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 309
Target Start/End: Original strand, 16598193 - 16598361
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaattt-ctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttct 236  Q
    ||||||||| ||||||||||||||||||||| ||||||||| || ||| |||  ||||||     |||||||||||||||| ||  |||||| ||||| |    
T  16598193 ttttattcattcaataatattttagagagttttctcaatttactggtgtattttggaacc----ctattttcacaagtttgtcgcgtgcaaacttgtt-t 16598287  T
Q  237 ttttct-atctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagatttctc 309  Q
     ||||| ||||| ||| ||||||||||| ||   |||||||| || ||| ||||||||||| ||||| ||||||    
T  16598288 ctttctaatctaagtttagcgcttgctaaccattgcttccgttttacgttagttggtattagagtaggtttctc 16598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 30440653 - 30440732
Alignment:
Q  107 agcttaacagttgtagcgtaaga-gacataaattttattcaatcaataatattttagagagttatctcaatttctagtggatt 188  Q
    ||||||||||||||||| ||||| ||   || ||||||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  30440653 agcttaacagttgtagcataagatga---aacttttattcattcaataatattttagagagttttctcaatttctggtggatt 30440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 37189871 - 37189977
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttggtattaaagt 300  Q
    |||||||||||||||| || ||||||| || ||| |||||||||||| || || ||||||| |||||| ||||||||| ||||||| ||||||| | ||     
T  37189871 tattttcacaagtttgtcgcttgcaaacttattc-ttttctatctagttttagagcttgctaaccctaagcttccgtactgcgtcaattggtatcagagc 37189969  T
Q  301 agatttct 308  Q
    ||||||||    
T  37189970 agatttct 37189977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 16598082 - 16598169
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacc 196  Q
    |||||||| |||||||  |||||||||  | ||||||||| ||||||||||||||||||||| ||||| ||||| ||| ||| |||||||    
T  16598082 agcttaacggttgtagactaagagaca--acttttattcattcaataatattttagagagttttctcagtttctggtgtatttcggaacc 16598169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 24577672 - 24577622
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggatt 188  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  24577672 ttttattcattcaataatattttagagagttttctcaatttctggtggatt 24577622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 22520883 - 22520799
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta-ccctacgcttccgtattgcgtca 286  Q
    ||||||||||| |||| || ||||||| ||| |||||| ||| ||||||| ||||||||||| |||||||||||| ||||||||||    
T  22520883 tattttcacaaatttgtcgcttgcaaacttgatctttt-ctacctaggtttagcgcttgctaaccctacgcttccttattgcgtca 22520799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 2188513 - 2188457
Alignment:
Q  112 aacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagtt 168  Q
    ||||| |||||| |||| | ||||| |||||||||||||||||||||||||||||||    
T  2188513 aacagatgtagcctaagcggcataacttttattcaatcaataatattttagagagtt 2188457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 18468626 - 18468714
Alignment:
Q  170 tctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta 263  Q
    ||||||||||| |||||||||||||||     |||||||||||||||| || ||||||  |||||| ||||||| ||||||| |||||||||||    
T  18468626 tctcaatttctggtggattccggaacc----ctattttcacaagtttgtcgcttgcaagcttgttc-ttttctacctaggtttagcgcttgcta 18468714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 24578909 - 24578804
Alignment:
Q  150 aataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctagg 249  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||     ||||||||||  |||  || ||||||| |||||  ||||| |||||||    
T  24578909 aataatattttagagagttttcacaatttctagtggattccagaacc----ctattttcacagatttaccgcttgcaaacttgtttcttttcgatctagg 24578814  T
Q  250 ttcagcgctt 259  Q
    || |||||||    
T  24578813 tttagcgctt 24578804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 25479548 - 25479489
Alignment:
Q  139 tttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacctt 198  Q
    |||||||| ||||||| |||| |||||||| |||||| |||| |||||||||||||||||    
T  25479548 tttattcattcaataaaatttcagagagttttctcaaattctggtggattccggaacctt 25479489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 30442472 - 30442522
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggatt 188  Q
    |||| |||| |||||||||||||| |||||| |||||||||||| ||||||    
T  30442472 ttttgttcattcaataatattttaaagagttttctcaatttctaatggatt 30442522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 138 - 317
Target Start/End: Complemental strand, 13991523 - 13991349
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| ||||||||||||||||||||| |||||| |||| ||||||||| ||||||    ||||||| || ||||| || ||||||| |||||  |    
T  13991523 ttttattcattcaataatattttagagagttttctcaaattctggtggattccagaacct----tattttcgcatgtttgtcgcttgcaaacttgtttct 13991428  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagatttctcttgttcat 317  Q
    |||| |||||| || ||||||||||| |||||||||||| | ||||||||||||||| |||| | |||| || |||||||    
T  13991427 tttcaatctagatttagcgcttgctagcctacgcttccg-actgcgtcagttggtatcaaagcaaatttatcatgttcat 13991349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 315
Target Start/End: Original strand, 7634025 - 7634197
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||    || ||||| |||||||||  |||||||||| |||||| |    
T  7634025 ttttattcattcaataatattttagagagttttctcaatttctggtggattccagaa----ctctatttccacaagtttatcgtttgcaaacttgttcct 7634120  T
Q  238 tttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagatttctcttgttc 315  Q
    |||| ||||||||| | ||||| ||| | |||||||| | | ||||||||||||||  | ||||| ||||||||||||    
T  7634121 tttcaatctaggtttaacgcttactagcatacgcttctg-actgcgtcagttggtaacagagtaggtttctcttgttc 7634197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 107 - 278
Target Start/End: Complemental strand, 21433735 - 21433571
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattt 206  Q
    ||||||||||||||||| |||||||||  | ||||||||| |||||||||||||||||| || ||||||||| |  || |||| ||||||     |||||    
T  21433735 agcttaacagttgtagc-taagagaca--agttttattcattcaataatattttagagaattttctcaatttatgatgaattctggaacc----ctattt 21433643  T
Q  207 tcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgta 278  Q
    ||| ||||||| || |||| || |||||||||||||||||||||| ||| |  ||||  |||||||||||||    
T  21433642 tcataagtttgtcgcttgcgaatttgttctttttctatctaggtttagcaccagctatactacgcttccgta 21433571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 270
Target Start/End: Complemental strand, 22486918 - 22486792
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||| | || ||||| ||| |||||||| ||||||||||| |||||||||||||||     |||||||||||| ||| || ||||||| ||| ||||    
T  22486918 ttttatttattccataatgtttcagagagttttctcaatttctggtggattccggaacc-----tattttcacaag-ttgtcgcttgcaaacttggtctt 22486825  T
Q  238 tttctatctaggttcagcgcttgctaccctacg 270  Q
    ||||||| |||||| ||||||||||| ||||||    
T  22486824 tttctatataggtttagcgcttgctagcctacg 22486792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 6659414 - 6659330
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcag 287  Q
    |||||||||||||||| || ||||||| |||||||||| |||||||| || ||||||||||| ||||| |||||||| ||||||||    
T  6659414 tattttcacaagtttgtcgcttgcaaacttgttctttt-ctatctagatttagcgcttgctaacctacacttccgtactgcgtcag 6659330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 10494848 - 10494957
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||| |||||||||    || |||||||||| ||||| |  ||||||| |||||  |    
T  10494848 ttttattcattcaataatattttagagagttttctcaatttctggtgaattccggaa----ctctattttcacaggtttgtcacttgcaaacttgtttct 10494943  T
Q  238 tttctatctaggtt 251  Q
    |||| |||||||||    
T  10494944 tttccatctaggtt 10494957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 287
Target Start/End: Original strand, 40206088 - 40206238
Alignment:
Q  133 ataaattttattcaatcaataatattttagagagttat-ctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagtt 231  Q
    |||| ||||||||| |||||||||||||||||| || | |||||||||| ||| |||||| |||  |    ||||||||||||||| || |||| || ||    
T  40206088 ataatttttattcattcaataatattttagagaatttttctcaatttctggtgaattccgaaacact----attttcacaagtttgtcgcttgcgaactt 40206183  T
Q  232 gttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcag 287  Q
    || || |||| || ||| || ||||||||||| |||||||||||||| ||||||||    
T  40206184 gt-ctctttcaatttagatttagcgcttgctagcctacgcttccgtagtgcgtcag 40206238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 38888134 - 38888025
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| ||||  |||||||||||| || |||||||||||| ||||||||| ||||     |||||||||||||||| || ||||||| |||||  |    
T  38888134 ttttattcattcaaccatattttagagaattttctcaatttctaatggattccgaaacc----ctattttcacaagtttgtcgcttgcaaatttgtttat 38888039  T
Q  238 tttctatctaggtt 251  Q
    |||| |||||||||    
T  38888038 tttcaatctaggtt 38888025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 9260490 - 9260610
Alignment:
Q  109 cttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttc 208  Q
    |||||||| |||||| ||||| ||| || | ||||||| ||||| |||||||||| |||| ||||||||||| |||||||| | ||||     |||||||    
T  9260490 cttaacaggtgtagcttaagaaaca-aactattattcattcaattatattttagatagttttctcaatttctggtggattctgaaacc----ctattttc 9260584  T
Q  209 acaagtttgacgtttgcaaagttgtt 234  Q
     |||||||| |||||||||| |||||    
T  9260585 gcaagtttgtcgtttgcaaacttgtt 9260610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 13990821 - 13990763
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacc 196  Q
    ||||||||| ||||||||||||||||||||| | |||||||||  |||||||| |||||    
T  13990821 ttttattcattcaataatattttagagagttttttcaatttctgatggattccagaacc 13990763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 50519272 - 50519231
Alignment:
Q  155 tattttagagagttatctcaatttctagtggattccggaacc 196  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  50519272 tattttagagagttttctcaatttctagtggattccagaacc 50519231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 17255002 - 17254893
Alignment:
Q  163 agagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct 262  Q
    |||||| ||||||||||||| ||||| | |||    || |||||||||||||||| || ||| ||| |||||| | ||| ||||| ||| |||| |||||    
T  17255002 agagttttctcaatttctaggggatttcagaa----ctctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcgtttgct 17254907  T
Q  263 accctacgcttccg 276  Q
    | ||||||||||||    
T  17254906 agcctacgcttccg 17254893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 7723746 - 7723665
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtc 285  Q
    ||||||||||||||||  | ||||||| |||||| ||||| ||||| ||| ||||||||||| |||||||||| ||| ||||||    
T  7723746 tattttcacaagtttgtagcttgcaaacttgttc-ttttcaatcta-gtttagcgcttgctagcctacgcttctgtactgcgtc 7723665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 24667696 - 24667746
Alignment:
Q  237 ttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcag 287  Q
    ||||||||||||||| | ||||||||| ||||||||||| || ||||||||    
T  24667696 ttttctatctaggtttaacgcttgctagcctacgcttccatactgcgtcag 24667746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 28897915 - 28897973
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaa-tttctagtggattccggaac 195  Q
    ||||||||| |||||||||||||| ||| || |||||| ||||| ||||||||||||||    
T  28897915 ttttattcattcaataatattttaaagacttttctcaattttctggtggattccggaac 28897973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 18689655 - 18689614
Alignment:
Q  148 tcaataatattttagagagttatctcaatttctagtggattc 189  Q
    |||||||||||||| |||||| ||||||||||| ||||||||    
T  18689655 tcaataatattttatagagttttctcaatttctggtggattc 18689614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 19935492 - 19935575
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtca 286  Q
    |||||||| ||||||| || ||||||| || || |||||||||||  ||| |||||| |||| |||||||||| ||| |||||||    
T  19935492 tattttcataagtttgtcgcttgcaaatttatt-tttttctatctgagtttagcgctggctagcctacgcttctgtactgcgtca 19935575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 286
Target Start/End: Complemental strand, 27822263 - 27822118
Alignment:
Q  138 ttttattcaatcaataatattttagagagttat-ctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttct 236  Q
    ||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||||||| | |    ||||||||||||| || ||| ||| ||||||     
T  27822263 ttttattcaatcaataatattttagagagtttttctcaatttctggtggatttcggaaccctgt----tttcacaagtttgtcgcttgaaaacttgttcc 27822168  T
Q  237 ttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtca 286  Q
    |||||||| |||||| |||| |||||| |||||||||||||| |||||||    
T  27822167 ttttctatttaggtttagcgtttgctagcctacgcttccgtactgcgtca 27822118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 33615678 - 33615504
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaattttattcaatca----ataatattttagagagttatctcaatttctagtggattccggaaccttctatatt 205  Q
    |||||||||||||| |||||||  ||| ||||| |||||||    |||||||||||||||||| | ||||||| | ||| |||| | |||| |    |||    
T  33615678 ttaacagttgtagcttaagaga--taacttttactcaatcagtaaataatattttagagagttttttcaatttatggtgaattctgaaaccct----att 33615585  T
Q  206 ttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtca 286  Q
    |||||||||||| || ||||||| ||||||||||||||||||||||  ||||||| || |||||| ||||||| |||||||    
T  33615584 ttcacaagtttgtcgcttgcaaacttgttctttttctatctaggttttgcgcttgttagcctacgtttccgtaatgcgtca 33615504  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 3536039 - 3536127
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttg 290  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||||||||    
T  3536039 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcagttg 3536127  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 3542250 - 3542337
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagtt 289  Q
    |||||||||||||||| || || |||| |||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||    
T  3542250 tattttcacaagtttgtcgcttacaaacttgttctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcagtt 3542337  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 18728019 - 18727929
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacctt 198  Q
    ||||||| ||||||||| ||| ||  |||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||    
T  18728019 agcttaagagttgtagcctaa-agggataacttttattcaatcaattatattttagagagttttctcaatttctggtggatttcggaacctt 18727929  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 294
Target Start/End: Complemental strand, 8049092 - 8048958
Alignment:
Q  155 tattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcag 254  Q
    |||||||||||||| ||||||||||| |||||| ||||| |||    |||||||||||||||| |  ||||||| || ||||||||  ||||||| | |     
T  8049092 tattttagagagttttctcaatttctggtggatcccggagcct----tattttcacaagtttgtcacttgcaaactttttcttttt-aatctaggattaa 8048998  T
Q  255 cgcttgctaccctacgcttccgtattgcgtcagttggtat 294  Q
     |||||||| |||||||||| |||||| ||||||||||||    
T  8048997 tgcttgctagcctacgcttctgtattgggtcagttggtat 8048958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 30049921 - 30050010
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttgg 291  Q
    |||||||||||||||| || ||||||| |||||| |||||||| |||||| |||||||||| ||||| |||||||||| ||||||||||||    
T  30049921 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatataggtttagcgcttgctaacccttcgcttccgtactgcgtcagttgg 30050010  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 271
Target Start/End: Original strand, 11658876 - 11659005
Alignment:
Q  138 ttttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttct 236  Q
    ||||||||||||||||||||||||||||| || ||||||||| | |||||||||  ||    || |||||||||||||||  || ||||||| ||||||     
T  11658876 ttttattcaatcaataatattttagagagtttttctcaatttttggtggattccaaaa----ctctattttcacaagtttatcgcttgcaaatttgttc- 11658970  T
Q  237 ttttctatctaggttcagcgcttgctaccctacgc 271  Q
    ||||| ||||||||| || |||||||| |||||||    
T  11658971 ttttcaatctaggtttagtgcttgctaacctacgc 11659005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 32361284 - 32361374
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaacctt 198  Q
    ||||||| ||||||||| |||||||||  | ||||||||| ||||||||||||||||||| || ||||||||||| || ||||||||||||||    
T  32361284 agcttaaaagttgtagcttaagagaca--acttttattcattcaataatattttagagagtttttctcaatttctcgtagattccggaacctt 32361374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 29340890 - 29340814
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgta 278  Q
    |||||||||||||||| || ||||||| ||||| |||||||||||||||| ||||| |||| ||||||||||||||||    
T  29340890 tattttcacaagtttgtcgcttgcaaacttgtt-tttttctatctaggtttagcgcctgctaaccctacgcttccgta 29340814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 276
Target Start/End: Original strand, 12882066 - 12882202
Alignment:
Q  137 attttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttc 235  Q
    |||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| ||||     |||||||||||||||| || ||  ||| ||||      
T  12882066 attttattcattcaataatattttagagagtttttctcaatttctggtggattccgaaacc----ctattttcacaagtttgtcgctttaaaacttgtct 12882161  T
Q  236 tttttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
     || || |||||||||||| | ||||||  |||||||||||    
T  12882162 cttctcaatctaggttcagtgtttgctagtctacgcttccg 12882202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 30052208 - 30052297
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttgg 291  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| ||||||| || ||||| || |||| || ||||||||||||    
T  30052208 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgctttctaacccttcgattccatactgcgtcagttgg 30052297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 14216810 - 14216882
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttct 180  Q
    ||||||||||||||||| ||||||  |||| ||||||| | |||||||||||| |||||||| |||||||||||    
T  14216810 agcttaacagttgtagcctaagagg-ataacttttatttattcaataatatttcagagagttttctcaatttct 14216882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 24443242 - 24443157
Alignment:
Q  109 cttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacc 196  Q
    ||||||||||||||| |||||||  ||| ||||||||| |||||||||||  |||||||| ||| ||||||| || ||||| ||||||    
T  24443242 cttaacagttgtagcctaagaga--taacttttattcattcaataatattgcagagagttttcttaatttctggttgattctggaacc 24443157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 34373959 - 34373878
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattcc 190  Q
    ||||||||||||||||| |||||| ||    ||||  ||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  34373959 agcttaacagttgtagcctaagaggcagc--ttttgatcattcaataatattttagagagttttctcaatttctggtggattcc 34373878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 29342063 - 29342113
Alignment:
Q  237 ttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  29342063 ttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 29342113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 18718252 - 18718171
Alignment:
Q  234 tctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtattaaagtagatttctcttgttc 315  Q
    |||||||| ||||||||| ||||||||||| ||||| |||| ||| |||||| |||||||| | || || |||||| |||||    
T  18718252 tctttttcaatctaggtttagcgcttgctagcctacacttctgtactgcgtccgttggtatcagagcaggtttctcctgttc 18718171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 1127199 - 1127320
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctt 237  Q
    ||||||||| |||||| |||||||||||||| ||||||||| | ||| |||||| ||    |  ||||||||||| |||| || ||||||| |||||  |    
T  1127199 ttttattcattcaatattattttagagagttttctcaatttttggtgtattccgaaa----cactattttcacaaatttgtcgcttgcaaacttgtttct 1127294  T
Q  238 tttctatctaggttcagcgcttgcta 263  Q
    |||  ||||||||| |||||| ||||    
T  1127295 ttttaatctaggtttagcgctcgcta 1127320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 18727115 - 18727186
Alignment:
Q  204 ttttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    |||||||||||||| || |||| || ||||  |||||| ||||||||| |||| |||||| ||||||||||||    
T  18727115 ttttcacaagtttgtcgcttgcgaacttgtg-tttttcaatctaggtttagcgtttgctagcctacgcttccg 18727186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 133 - 286
Target Start/End: Complemental strand, 2472838 - 2472689
Alignment:
Q  133 ataaattttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagtt 231  Q
    |||| ||||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||||     |||||||||||||||| || ||||||| ||    
T  2472838 ataacttttattcaatcaataatattttagtgagtttttctcaatttctggtggattccggaacc----ctattttcacaagtttgtcggttgcaaactt 2472743  T
Q  232 gttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtca 286  Q
    | ||| |||| || |||||| ||||||||||| ||||||||| |||| |||||||    
T  2472742 g-tctctttcaatttaggtttagcgcttgctagcctacgctttcgtactgcgtca 2472689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 43306756 - 43306643
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta-ccctacgcttccgtattgcgtcagttggtattaaagt 300  Q
    ||||||||||||||||  | ||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| | ||     
T  43306756 tattttcacaagtttgttgcttgcaaacttgttctttt-ctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcagttggtatcagagc 43306658  T
Q  301 agatttctcttgttc 315  Q
    || |||||| |||||    
T  43306657 aggtttctcctgttc 43306643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 43304044 - 43303960
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| |||||||||| ||| |||||||||||| |||||||    
T  43304044 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgcttgctaaccttacgcttccgtactgcgtca 43303960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 365766 - 365593
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctc-aatttctagtggattccggaaccttctatatt 205  Q
    ||||||||||||||||| |||||||  ||| ||||||||||||||||||||||  |||| || |||| | ||||| ||||||||  |||||     ||||    
T  365766 agcttaacagttgtagcctaagaga--taacttttattcaatcaataatatttctgagacttttctctattttctggtggattcaagaacc----ctatt 365673  T
Q  206 ttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtca 286  Q
    |||||||||||| || |||  || |||||  |||||| | |||||| |||| |||||| |||||||||||||| |||||||    
T  365672 ttcacaagtttgtcgcttgggaatttgtt-attttctttttaggtttagcgtttgctagcctacgcttccgtaatgcgtca 365593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 3068939 - 3068865
Alignment:
Q  222 ttgcaaagttgttctttttctatctaggttcagcgcttgctaccc-tacgcttccgtattgcgtcagttggtatta 296  Q
    ||||||| |||||||||| ||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||    
T  3068939 ttgcaaacttgttctttt-ctatctaggtttagcgcttgctaaccatacgcttccgtactgcgtcagttggtatta 3068865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 52708852 - 52708923
Alignment:
Q  205 tttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    ||||||||||||  || ||||||| |||||||||||||||||||||| |||||||| || ||||||||||||    
T  52708852 tttcacaagtttatcgcttgcaaatttgttctttttctatctaggtttagcgcttgttaacctacgcttccg 52708923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 5128914 - 5128998
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||| ||||| |||| |||||||||||| ||| |||||||    
T  5128914 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttagcgcctgctaaccctacgcttctgtactgcgtca 5128998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 8536546 - 8536461
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaa 194  Q
    ||||| ||||||||||| |||||| ||  | ||||||||| |  ||||||||||||||||||  |||||||||| |||||||||||||    
T  8536546 agcttgacagttgtagcctaagaggca--acttttattcattagataatattttagagagtttcctcaatttctggtggattccggaa 8536461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 1320198 - 1320135
Alignment:
Q  133 ataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacc 196  Q
    |||| ||||||||| |||||||||||||||||| || |||| |||||| |||||||| ||||||    
T  1320198 ataacttttattcattcaataatattttagagaattttctctatttctggtggattctggaacc 1320135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 3063821 - 3063736
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcag 287  Q
    |||||||||||||||| || ||||||| |  ||||||| ||||||||||| | |||||||| ||||||||||| |||| ||||||||    
T  3063821 tattttcacaagtttgtcgcttgcaaactctttctttt-ctatctaggtttaacgcttgctaaccctacgctttcgtactgcgtcag 3063736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 45168434 - 45168343
Alignment:
Q  170 tctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta 263  Q
    ||||||||||| |||||||| |||||| | ||| |||||||||||||| || ||||||| ||||| | |||| ||||||||| ||| |||||||    
T  45168434 tctcaatttcttgtggattctggaaccctatat-ttttcacaagtttgtcgcttgcaaacttgtt-tatttcaatctaggtttagcacttgcta 45168343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 35908569 - 35908496
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagtt-gttctttttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    |||||| ||||||||| |||||||||| || |||||||  ||||||||||| ||||||||||| |||| |||||||    
T  35908569 tatttttacaagtttgtcgtttgcaaattttgttcttt--ctatctaggtttagcgcttgctaacctatgcttccg 35908496  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 2107994 - 2107938
Alignment:
Q  141 tattcaatcaataatattttagagagttatctcaatttctagtggattccggaacctt 198  Q
    |||||| |||||| |||||||||||||| ||||||| ||| ||||||| |||||||||    
T  2107994 tattcattcaatagtattttagagagttttctcaatctctggtggatt-cggaacctt 2107938  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 260
Target Start/End: Original strand, 18252340 - 18252479
Alignment:
Q  115 agttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagt 214  Q
    ||||||||| |||||||  ||| || |||||| |||||||||||||| |||||| |||||||||||||||||||   |||||     |||||||||| ||    
T  18252340 agttgtagcctaagaga--taacttctattcattcaataatattttaaagagttttctcaatttctagtggattatagaacc----ctattttcacaggt 18252433  T
Q  215 ttgacgtttgcaaagttgttctttttctatctaggttcagcgcttg 260  Q
    ||| || ||||||| ||||||| |||||||||||||| | ||||||    
T  18252434 ttgtcgcttgcaaacttgttctatttctatctaggtttaacgcttg 18252479  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 21849049 - 21848957
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtcagttggtat 294  Q
    |||||||||||||||| || ||||||| |||||| |||||||||||||||  ||||||||| |||||||||||||||| |||||| ||||||||    
T  21849049 tattttcacaagtttgtcgcttgcaaacttgttc-ttttctatctaggtttggcgcttgctaaccctacgcttccgtactgcgtcggttggtat 21848957  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 276
Target Start/End: Complemental strand, 8456554 - 8456389
Alignment:
Q  110 ttaacagttgtagcgtaagagacataaa-ttttattcaatcaataatattttagagagttatctcaatt----tctagtggattccggaaccttctatat 204  Q
    |||||||||||||| ||||||||||||| | || ||||||||||||||||||  |||||| ||||||||    ||| ||||||| ||||| |     |||    
T  8456554 ttaacagttgtagcctaagagacataaactattgttcaatcaataatatttt--agagttttctcaatttcgatctggtggatttcggaatc----ctat 8456461  T
Q  205 tttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    ||| ||||||| | || |||| || |||||  ||||| ||||||||| ||||||||||||||||||||||||    
T  8456460 ttttacaagttcgtcgcttgcgaacttgtttcttttcaatctaggtttagcgcttgctaccctacgcttccg 8456389  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 26140294 - 26140422
Alignment:
Q  144 tcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttcta 243  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||  |||||     |||||||| ||||||| || ||||||  ||||| | |||| |    
T  26140294 tcaatcaataatattttagagagttttctcaatttttggtggattcttgaacc----ctattttcataagtttgtcgcttgcaatcttgttttctttcaa 26140389  T
Q  244 tctaggttcagcgcttgctaccctacgcttccg 276  Q
    ||||| || |||| |||||| |||| |||||||    
T  26140390 tctagatttagcgtttgctaacctatgcttccg 26140422  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 22440806 - 22440936
Alignment:
Q  142 attcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttcttttt 240  Q
    ||||| |||||||||||||||| || || ||| |||||||||||||||| ||||||     |||| ||| ||||||| || |||| ||  ||||| ||||    
T  22440806 attcattcaataatattttagataggttttcttaatttctagtggattctggaacc----ctattatcataagtttgtcgcttgcgaacatgttc-tttt 22440900  T
Q  241 ctatctaggttcagcgcttgctaccctacgcttccg 276  Q
    ||||||||||| ||| ||||||| ||||||||||||    
T  22440901 ctatctaggtttagcacttgctagcctacgcttccg 22440936  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 40778870 - 40778786
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-accctacgcttccgtattgcgtca 286  Q
    |||||| ||||||||| || ||||||| |||||||||| ||||||||||| |||||||| | ||||| |||||||||| |||||||    
T  40778870 tatttttacaagtttgtcgcttgcaaacttgttctttt-ctatctaggtttagcgcttgttaaccctgcgcttccgtactgcgtca 40778786  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 19497439 - 19497327
Alignment:
Q  148 tcaataatattttagaga-gttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatct 246  Q
    ||||||||||||||||||  || ||||||||| |  |||||| |||||||     |||||||||||||||| || ||||||| ||||||||||| | |||    
T  19497439 tcaataatattttagagattttttctcaatttttgatggatttcggaacc----ctattttcacaagtttgtcgcttgcaaacttgttctttttttttct 19497344  T
Q  247 aggttcagcgcttgcta 263  Q
    |  || |||||||||||    
T  19497343 acatttagcgcttgcta 19497327  T

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Target: scaffold0110 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 46846 - 46728
Alignment:
Q  170 tctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgct-acccta 268  Q
    ||||||||| | |||||||||||||||||    ||||| | | ||||| || ||||||| |||||||||| ||||||||||| |||||||||| ||||||    
T  46846 tctcaatttttggtggattccggaacctta---attttgataggtttgtcgcttgcaaacttgttctttt-ctatctaggtttagcgcttgctcacccta 46751  T
Q  269 cgcttccgtattgcgtcagttgg 291  Q
    |||||||||| ||||||||||||    
T  46750 cgcttccgtactgcgtcagttgg 46728  T

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Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 45346 - 45270
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta-ccctacgcttccgta 278  Q
    |||||||| ||||||| || ||||||| ||||||||| | ||||||  || ||||||||||| |||||||||||||||    
T  45346 tattttcataagtttgtcgcttgcaaacttgttctttct-tatctaattttagcgcttgctaaccctacgcttccgta 45270  T

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Target: scaffold0251 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 9647 - 9705
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattccggaacc 196  Q
    ||||||||| |||||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  9647 ttttattcattcaataatatttcagagagttttctcaatttctggtggatttcggaacc 9705  T

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Target: scaffold0330 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 263
Target Start/End: Original strand, 17555 - 17705
Alignment:
Q  107 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatatt 205  Q
    ||||||||||||||| | ||||||  |  ||||||||||| | |||||||||||||| || || |||||| |||  ||||||||| |||||    |||||    
T  17555 agcttaacagttgtaacctaagaggaa--aattttattcattgaataatattttagatagtttttctcaaattcaggtggattccagaacc----atatt 17648  T
Q  206 ttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgcta 263  Q
    || ||||||||| |||||||||| ||||| | |||| ||||||||| | |||||||||    
T  17649 ttgacaagtttgtcgtttgcaaacttgtt-tctttcaatctaggtttaacgcttgcta 17705  T

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Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 1602 - 1723
Alignment:
Q  138 ttttattcaatcaataatattttagagag-ttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttct 236  Q
    ||||||||| | |||||||||||||| || || |||||| |||| ||||||||| |||||    ||||||| ||||||||| |||||||||| ||||| |    
T  1602 ttttattcattgaataatattttagatagtttttctcaaattctggtggattccagaacc----atattttgacaagtttgtcgtttgcaaacttgtt-t 1696  T
Q  237 ttttctatctaggttcagcgcttgcta 263  Q
     |||| ||||||||| | |||||||||    
T  1697 ctttcaatctaggtttaacgcttgcta 1723  T

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Target: scaffold0240; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 15992 - 16043
Alignment:
Q  138 ttttattcaatcaataatattttagagagttatctcaatttctagtggattc 189  Q
    ||||||||| |||||||||||||| |||||| ||| ||||||| ||||||||    
T  15992 ttttattcattcaataatattttatagagttttctaaatttctggtggattc 16043  T

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Target: scaffold0531 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 294
Target Start/End: Complemental strand, 11672 - 11581
Alignment:
Q  202 tattttcacaagtttgacgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccgtattgcgtcagttggtat 294  Q
    |||||||||||||||| |  ||||||| || ||||||||  ||||||| | |  |||||||| |||||||||| |||||| ||||||||||||    
T  11672 tattttcacaagtttgtcacttgcaaactttttcttttta-atctaggattaatgcttgctagcctacgcttctgtattgggtcagttggtat 11581  T

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Target: scaffold0090 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 15207 - 15157
Alignment:
Q  139 tttattcaatcaataatattttagagagttatctcaatttctagtggattc 189  Q
    |||||||| |||||||||||||||||  || ||||||||||| ||||||||    
T  15207 tttattcattcaataatattttagaggattttctcaatttctggtggattc 15157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 144085 - 144022
Alignment:
Q  112 aacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatt 177  Q
    |||||||||||| || ||||  ||| ||||||| | ||||||||||||||||||||| ||||||||    
T  144085 aacagttgtagcatatgaga--taacttttatttattcaataatattttagagagttttctcaatt 144022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 273
Target Start/End: Original strand, 37659 - 37786
Alignment:
Q  140 ttattcaatcaataatattttagagagttatctcaatttctagtggattccggaaccttctatattttcacaagtttgacgtttgcaaagttgttctttt 239  Q
    ||||||| | ||| ||||||||||||||| ||  ||||||| || ||||  ||||||     |||||||| ||||||| || ||||||| |||||| |||    
T  37659 ttattcatttaattatattttagagagttttcctaatttctggtcgattttggaacc-----tattttcataagtttgtcgcttgcaaacttgttc-ttt 37752  T
Q  240 tctatctaggttcagcgcttgctaccctacgctt 273  Q
    || ||||||||| ||||||| ||| | |||||||    
T  37753 tcaatctaggtttagcgctttctagcttacgctt 37786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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