View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3424_high_13 (Length: 306)
Name: NF3424_high_13
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3424_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 9203786 - 9203493
Alignment:
| Q |
13 |
catcacaaagagaaacaaagaaaaaggtagacaaatcaaagatcaaacatggatggagaaatcaacaatttcatcatggtatggaccatagctgcatcaa |
112 |
Q |
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| T |
9203786 |
catcacaaagagaaacaaagaaaaaggtagacaaatcaaagatcaaacatggatggagaaatcaacaatttcatcatggtatggaccatagctgcatcaa |
9203687 |
T |
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| Q |
113 |
caatggcctattcccacacaattggcaaacttatctctcaaggcacatcaagactcatagcccttatccctgccataatcatcctctttctcctccctct |
212 |
Q |
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| T |
9203686 |
caatggcctattcccacacaattggcaaacttatctctcaaggcacatcaagactcatagcccttatccctgccataatcatcctctttctcctccctct |
9203587 |
T |
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| Q |
213 |
aagactcatttcaatccatcttggaggtccttcatctttcttcattggttggctttccactttcaaactcttcctttttgccttcaacaaaggt |
306 |
Q |
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| T |
9203586 |
aagactcaattcaatccatcttggaggtccttcatctttcttcattggttggctttccactttcaaactcttcctttttgcctacaacaaaggt |
9203493 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 21781606 - 21781655
Alignment:
| Q |
250 |
ttcttcattggttggctttccactttcaaactcttcctttttgccttcaa |
299 |
Q |
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| T |
21781606 |
ttcttccttgtttggctctccactttcaaactcatccttttttccttcaa |
21781655 |
T |
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