View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3424_high_5 (Length: 429)
Name: NF3424_high_5
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3424_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 13461675 - 13461419
Alignment:
| Q |
1 |
gttcatataaatgactcaaccgttgagcagcaaaggctatgtttatgtctatattagttggtaaggtagtaacatcactcaaacaactaaaaacctttaa |
100 |
Q |
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| T |
13461675 |
gttcatataaatgactcaaccgttgagcagcaaaggctatgtttatgtctatattagttggtaaggtagaaacatcactcaaacaaccaaaaacctttaa |
13461576 |
T |
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| Q |
101 |
ttgaccgtggccaagaatttgaccatatagtatctcatcagaagacttgtttttgaatagctttgtaggaatcctattcattagtaatatagcatttaaa |
200 |
Q |
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| T |
13461575 |
ttgaccgtggccaagcatttgaccatatagtatctcataagaacacttgttttggaatagctttgtaggaatcctattcatcagtaatatagcatttaaa |
13461476 |
T |
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| Q |
201 |
actatgtgtaatgcaaaaggttttagatctgaagataaaatcataccattttacttg |
257 |
Q |
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| T |
13461475 |
actatgtgtaatgcaaaaggttttagatctgaagataaaatcataccattttacttg |
13461419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13461719 - 13461676
Alignment:
| Q |
1 |
gttcatataaatgactcaaccgttgagcagcaaaggctatgttt |
44 |
Q |
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| T |
13461719 |
gttcatataaatgactcaaccgttgagcagcaacggctatgttt |
13461676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 13461806 - 13461766
Alignment:
| Q |
2 |
ttcatataaatgactcaaccgttgagcagcaaaggctatgt |
42 |
Q |
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| T |
13461806 |
ttcatataaatgactcaaccgttgagcagcaatggctatgt |
13461766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13461763 - 13461722
Alignment:
| Q |
1 |
gttcatataaatgactcaaccgttgagcagcaaaggctatgt |
42 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
13461763 |
gttcatataaaagactcaaccattgagcagcaaaggctatgt |
13461722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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