View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3424_high_8 (Length: 369)
Name: NF3424_high_8
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3424_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 50314080 - 50313812
Alignment:
| Q |
1 |
ttaataatcatttgttatcttctccagcgagcttgtcatgaatcaccctatgccttactctccttaacataaaaacctaactcatcccaatactcacatt |
100 |
Q |
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| T |
50314080 |
ttaataatcatttgttatcttctccagcgagcttgtcatgaatcaccctatgccttactctccttaacataaaaacctaactcatcccaatactcacatt |
50313981 |
T |
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| Q |
101 |
catccacatccac------tcattccactttgttcctcacttcagttcaatggctcgtaaatttttcaacttcatcctcttcattttcttctgggtttcc |
194 |
Q |
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| T |
50313980 |
catccacatccacatccactcattccactttgttcctcacttgagttcaatggctcgtatatttttcaactttatcctcttcattttcttctgggtttcc |
50313881 |
T |
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| Q |
195 |
ccattagcacattctcgaaacataccccacaatgccaaaaccacaatactcgatgttgtttcttccatt |
263 |
Q |
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| T |
50313880 |
ccattagcacattctcgaaacataccccacaatgccaaaaccacaatactcgatgttgtttcttccatt |
50313812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 50313752 - 50313719
Alignment:
| Q |
323 |
gagtccattcacttcttcaacatcaacactgtct |
356 |
Q |
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| T |
50313752 |
gagtccattcacttcttcaacatcaacactgtct |
50313719 |
T |
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