View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3424_high_9 (Length: 355)
Name: NF3424_high_9
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3424_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 1395398 - 1395722
Alignment:
| Q |
18 |
cacagatatatttgtaggtctagcaaaaataagtgaacacaaat-----gaaatgaaatgaaactatagctttttgatctagatatttctgaactctcat |
112 |
Q |
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| T |
1395398 |
cacagatatatttgtaggtctagcaaagataagtgaacacaaatgaaatgaaatgaaatgaaactatagctttttgatctagatatttctgaactctcat |
1395497 |
T |
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| Q |
113 |
tttgcaacttgcattttgagagtaatgatttgtaaaggcttaatgaatccaatccaaatagcataaaacaaaacaacttttcttgaaatctacgagaatc |
212 |
Q |
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| T |
1395498 |
tttgcaacttgcattttgagagtaatgatttgtaaaggcttaatgaatccaatccaaatagcataaaacaaaacaacttttcttgaaatctacgagaatc |
1395597 |
T |
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| Q |
213 |
ccaatactttgtctgaatctggtctatcgctgataaatattgtgtagtccattctgtttgtaactctgtttaggacttattctaggtgatagtcatggat |
312 |
Q |
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| T |
1395598 |
ccaatactttgtctgaatctggtctatggctgataaatattgtgtagtccattctgtttgtaactctgtttaggacttattctaggtgatagtcatggat |
1395697 |
T |
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| Q |
313 |
tactatttggttcaattgtttgtga |
337 |
Q |
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| T |
1395698 |
tactatttggttcaattgtttgtga |
1395722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 10389127 - 10389223
Alignment:
| Q |
69 |
aatgaaactatagctttttgatctagatatttctgaactctcatttt-gcaacttgcattttgagagtaatgatttgtaaaggcttaatgaatccaa |
164 |
Q |
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| T |
10389127 |
aatgaaagtatagccttttgttatagatatttctttcctctcatttttgcaacttgcagtttgagagtaatgatttgtaagggcttaatgaatccaa |
10389223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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