View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3424_low_15 (Length: 293)

Name: NF3424_low_15
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3424_low_15
NF3424_low_15
[»] chr2 (1 HSPs)
chr2 (1-293)||(55628-55920)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 55920 - 55628
Alignment:
Q  1 ccgtggagattgtgtagtgttgcacaagttgaacaagcaaagatattactttcggttattccaatttttgcatgcactataattttcaacactatcttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55920 ccgtggagattgtgtagtgttgcacaagttgaacaagcaaagatattactttcggttattccaatttttgcatgcactataattttcaacactatcttag 55821  T
Q  101 cacaacttcaaacattctcggtccagcaaggaagtgccatggacacacatgtcacaaaatcatttcatatccctccagcatcacttcagtcaattcctta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55820 cacaacttcaaacattctcggtccagcaaggaagtgccatggacacacatgtcacaaaatcatttcatatccctccagcatcacttcagtcaattcctta 55721  T
Q  201 catttttctcatcgttgtagtccctctctatgatactttatttgttccctttgcaagaaaaagaacaggtcatgagtcaggaatctcaccttt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  55720 catttttctcatcgttgtagtccctctctatgatactttatttgttccctttgcaagaaaaataacaggtcatgagtcaggaatctcaccttt 55628  T

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