View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3424_low_18 (Length: 269)
Name: NF3424_low_18
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3424_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 14812841 - 14812581
Alignment:
| Q |
1 |
ttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaa |
100 |
Q |
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| T |
14812841 |
ttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaa |
14812742 |
T |
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| Q |
101 |
tcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtc |
200 |
Q |
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| T |
14812741 |
tcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtc |
14812642 |
T |
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| Q |
201 |
aaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
261 |
Q |
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| T |
14812641 |
aaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
14812581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 15259836 - 15259576
Alignment:
| Q |
1 |
ttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaa |
100 |
Q |
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| T |
15259836 |
ttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaa |
15259737 |
T |
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| Q |
101 |
tcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtc |
200 |
Q |
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| T |
15259736 |
tcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtc |
15259637 |
T |
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| Q |
201 |
aaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
261 |
Q |
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| T |
15259636 |
aaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
15259576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 17521339 - 17521599
Alignment:
| Q |
1 |
ttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521339 |
ttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaa |
17521438 |
T |
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| Q |
101 |
tcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521439 |
tcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtc |
17521538 |
T |
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| Q |
201 |
aaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17521539 |
aaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtggtgatgt |
17521599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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