View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3424_low_2 (Length: 612)
Name: NF3424_low_2
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3424_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 64 - 597
Target Start/End: Complemental strand, 37495247 - 37494714
Alignment:
| Q |
64 |
attaaggtaattaattaattaatcgttacattgacctcaaaaagaaaatactaagctcctggtgcatattatgatctccctcaggatcaatcaaatgaaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37495247 |
attaaggtaattaattaattaatcgttacattgacctcaaaaagaaaatactaagctcctggtgaatattatgatctccctcaggatcaatcaaatgaaa |
37495148 |
T |
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| Q |
164 |
agattcacattcagaagatccaccaccaaccctcttaaaactacctctcaaatacataacttcattatcttcttctttattcacaatttccttacacttc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495147 |
agattcacattcagaagatccaccaccaaccctcttaaaactacctctcaaatacataacttcattatcttcttctttattcacaatttccttacacttc |
37495048 |
T |
|
| Q |
264 |
attactccagttccaacagcaacagaacgcatcaaactcaacacttcaatatcagtattcgaagcctttctcataacagcataaccaaccttctttccat |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495047 |
attactccagttccaacagcaacagaacgcatcaaactcaacacttcaatatcagtattcgaagcctttctcataacagcataaccaaccttctttccat |
37494948 |
T |
|
| Q |
364 |
tacagtacatagtccaaaatggcgtcgacaaaagcgaagaaaatcttcttccattgtcactgctactctctaatgcgattctcaatgttcctcctcgcat |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37494947 |
tacagtacatagtccaaaatggcgtcgacaaaagcgaagaaaatcttcttccattgtcactgctactctctaatgcgattctcaatgttcctcctcgcat |
37494848 |
T |
|
| Q |
464 |
ttccctcgctaaaatgtttgctggtactgctaattctagaaggagaattggggtagtggagtttgcatttgattgaatgcaaaaatttatttttcctttg |
563 |
Q |
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| T |
37494847 |
ttccctcgctaaaatgtttgctggtactgctaattctagaaggagaattggggtagtggagtttgcatttgattgaatgcaaaaacttatttttcctttg |
37494748 |
T |
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| Q |
564 |
cggtatccaaatattgtgcctgtgatggtggtgg |
597 |
Q |
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| T |
37494747 |
cggtatccaaatattgtgcctgtaatggtggtgg |
37494714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 39308133 - 39308105
Alignment:
| Q |
144 |
tcaggatcaatcaaatgaaaagattcaca |
172 |
Q |
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| T |
39308133 |
tcaggatcaatcaaatgaaaagattcaca |
39308105 |
T |
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