View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3424_low_4 (Length: 467)
Name: NF3424_low_4
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3424_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 32965946 - 32966370
Alignment:
| Q |
18 |
cttggaagctcaagagatttagcagtgggacctgtttctattgcttctcttgtattaggatccatgcttgcagaggaagtatctcccacaacagaatctg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32965946 |
cttggaagctcaagagatttagcagtgggacctgtttctattgcttctcttgtattaggatccatgcttgcagaggaagtatctcccacaacagaatctg |
32966045 |
T |
|
| Q |
118 |
gtctttttgttcagttagcttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaatatcactcatttattctcatagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32966046 |
gtctttttgttcagttagcttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaatatcactcatt------------ |
32966133 |
T |
|
| Q |
218 |
attttgttttacttttaaatttaaataaagtttgatacaaaatgattgaattatacaggctaggatttatcattgattttctatctaaggcaaccttaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32966134 |
---ttgttttacttttaaatttaaataaagtgtgatacaaaatgattgaattatacaggctaggatttatcattgattttctatctaaggcaaccttaat |
32966230 |
T |
|
| Q |
318 |
tgggtttatggctggagctgccataattgtgtctctacaacaactaaaaagcttacttggcatcacacattttactaaagagatgggcattattcctgtc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32966231 |
tgggtttatggctggagctgccataattgtgtctctacaacaactaaaaagcttacttggcatcacacattttactaaagagatgggcattattcctgtc |
32966330 |
T |
|
| Q |
418 |
atgcattctgtttttcaccacactgatgaggttgctcatt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32966331 |
atgcattctgtttttcaccacactgatgaggttgctcatt |
32966370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 389
Target Start/End: Original strand, 32954956 - 32955072
Alignment:
| Q |
273 |
caggctaggatttatcattgattttctatctaaggcaaccttaattgggtttatggctggagctgccataattgtgtctctacaacaactaaaaagctta |
372 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||| ||||||||| || |||||||||||||| |||||||||||| | |||||||| || ||| || |
|
|
| T |
32954956 |
caggctaggatttatcattgattttttatccaaagcaatcttaattggattcatggctggagctgctataattgtgtctttgcaacaacttaagagccta |
32955055 |
T |
|
| Q |
373 |
cttggcatcacacattt |
389 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
32955056 |
cttggaatcacacattt |
32955072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 32954687 - 32954864
Alignment:
| Q |
18 |
cttggaagctcaagagatttagcagtgggacctgtttctattgcttctcttgtattaggatccatgcttgcagaggaagtatctcccacaacagaatctg |
117 |
Q |
| |
|
|||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||| |||||||| |||||| | | ||||| ||||| || ||||| ||| |
|
|
| T |
32954687 |
cttggaagttcaagggatctagcagtaggacctgtttctattgcttcacttgttttaggatctatgcttagacaagaagtgtctccttcagcagaacctg |
32954786 |
T |
|
| Q |
118 |
gtctttttgttcagttagcttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaat |
195 |
Q |
| |
|
||| ||| |||| ||||| |||||||||| | |||||||||| | |||||||| | || |||||||||||||||| |
|
|
| T |
32954787 |
ttctgtttcttcaactagctcttacttcaaccttttttgctggtctatttcaagcttcactaggaattctaaggtaat |
32954864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 362
Target Start/End: Original strand, 3174138 - 3174231
Alignment:
| Q |
269 |
tatacaggctaggatttatcattgattttctatctaaggcaaccttaattgggtttatggctggagctgccataattgtgtctctacaacaact |
362 |
Q |
| |
|
|||||||| |||| ||| | |||||||||||||| |||||||| || | || || |||||||| || || || |||||||| ||||||||||| |
|
|
| T |
3174138 |
tatacaggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcactacaacaact |
3174231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 46482571 - 46482629
Alignment:
| Q |
137 |
ttttacttcaacatgttttgctggtatttttcaagcagctcttggaattctaaggtaat |
195 |
Q |
| |
|
||||||||||| || | ||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
46482571 |
ttttacttcaaaattctctgctgatctctttcaagcagctcttggaattctaaggtaat |
46482629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University