View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3424_low_7 (Length: 370)
Name: NF3424_low_7
Description: NF3424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3424_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 46921265 - 46920912
Alignment:
| Q |
1 |
aaaccatttcagcagatacaatgtccccacattttccatagaaatcaataagcccattcgcaacagaaacatcctctttatatccacaccgaacaataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921265 |
aaaccatttcagcagatacaatgtccccacattttccatagaaatcaataagcccattcgcaacagaaacatcctctttatatccacaccgaacaataaa |
46921166 |
T |
|
| Q |
101 |
agcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacgcacaaaatgtaatcgaattcggctctccatgcacacaaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921165 |
agcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacgcacaaaatgtaatcgaattcggctctccatgcacacaaagg |
46921066 |
T |
|
| Q |
201 |
aactccttaaacgccgcaattgcatccaaagaccttcgatcttgaactgcattagaaatataagcattccaagtagccaagtttctatgaggcatttcat |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921065 |
aactccttaaacgccgcaatcacatccaaagaccttcgatcttgaactgcattagaaatataagcattccaagtagccaagtttctatgaggcatttcat |
46920966 |
T |
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| Q |
301 |
caaacatgttacaagcatcaccgcgaaacccagttttacaatacatatcaaaac |
354 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46920965 |
caaacatgttacaagcatcaccgtgaaacccagttttacaatacatatcaaaac |
46920912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 353
Target Start/End: Original strand, 46891634 - 46891812
Alignment:
| Q |
174 |
gaattcggctctccatgcacacaaaggaactccttaaacgccgcaattgcatccaaagaccttcgatcttgaactgcattagaaatataagcattccaag |
273 |
Q |
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| T |
46891634 |
gaatttggctctccatgcacacatagaaactccttaaacacttcaattgcatccatagtacgccaatcttgaactgcaatggaaatataagcattccaag |
46891733 |
T |
|
| Q |
274 |
tagccaagtttctatgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaatacatatcaaaa |
353 |
Q |
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| T |
46891734 |
tggccaagtttctatgaggcatttcatcaaacatgttacaagcatcaac-caaagcccagttttgcaacacatatcaaaa |
46891812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 46891425 - 46891584
Alignment:
| Q |
7 |
tttcagcagatacaatgtccccacattttccatagaaatcaataagcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatg |
106 |
Q |
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|||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||| | ||| |
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| T |
46891425 |
tttcagcagatacaatgtccccacatttcccacaaaaactaataagcccattcgcaacagaaacatcctctttatatccaaaatgaattataaatgaatg |
46891524 |
T |
|
| Q |
107 |
taactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacgcacaaaa |
166 |
Q |
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|||| | | |||| |||||||||||| || ||||| || ||||||| | ||||||||| |
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| T |
46891525 |
taaccgtcacccgtgattcaatctcaacaagtcaacacaggcattcaggaccgcacaaaa |
46891584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 38311422 - 38311069
Alignment:
| Q |
1 |
aaaccatttcagcagatacaatgtccccacattttccatagaaatcaataagcccattcgcaacagaaacatcctctttatatccacaccgaacaataaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311422 |
aaaccatttcagcagatacaatgtccccacattttccatagaaatcaataagcccattcgcaacagaaacatcctctttatatccacaccgaacaataaa |
38311323 |
T |
|
| Q |
101 |
agcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacgcacaaaatgtaatcgaattcggctctccatgcacacaaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311322 |
agcatgtaactgacgcccgagattcaatctcaccatatcaacgcaagcattcaaaaatgcacaaaatgtaatcgaattcggctctccatgcacacaaaga |
38311223 |
T |
|
| Q |
201 |
aactccttaaacgccgcaattgcatccaaagaccttcgatcttgaactgcattagaaatataagcattccaagtagccaagtttctatgaggcatttcat |
300 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38311222 |
aactccttaaacgccacaatcgcatccaaagaccttcgatcttgaactgcattagaaatataagcattccaagtagccaagtttctttgaggcatttcat |
38311123 |
T |
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| Q |
301 |
caaacatgttacaagcatcaccgcgaaacccagttttacaatacatatcaaaac |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311122 |
caaacatgttacaagcatcaccgcgaaacccagttttacaatacatatcaaaac |
38311069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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