View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_high_16 (Length: 428)
Name: NF3425_high_16
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 49081741 - 49081983
Alignment:
| Q |
12 |
agagaggcacgtgttggtcccagaagggtgaaatggatggtggaaaaggaggcacgtgagcaaagagtaaagacaaaggaatgaatgaaggaagcggaga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49081741 |
agagaggcacgtgttggtcccagaagggtgaaatggatggtggaaaaggaggcacgtgagcaaagagtaaagacaaaggaatgaatgaaggaagcggaga |
49081840 |
T |
|
| Q |
112 |
gaagagaaatagatctggttgaatctgaaaccacaaaaacaaagaaagcaataagatatttagttttcgtggctgtaaggcggctattaagcatttaaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49081841 |
gaagagaaatagatctggttgaatctgagaccacaaaaacaaagaaagcaataagatatttagttttcgtggctgtaaggcggctattaagcatttaaag |
49081940 |
T |
|
| Q |
212 |
tagtttgaaaaaactattctcttttgtttgcttcttcgtccac |
254 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
49081941 |
tagtttgaaaaaactattctcttttgttttcttcttcctccac |
49081983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 283 - 410
Target Start/End: Original strand, 49081997 - 49082120
Alignment:
| Q |
283 |
cagatattttgttatattcattcaacttacttacttaagactccagctaactaacagatacatacatacgatttcgttctcttgtttgttgatgcggttt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49081997 |
cagatattttgttatattcattcaacttacttacttaagactccagctaactaacagatac----atacgatttcgttctcttgtttgttgatgcggttt |
49082092 |
T |
|
| Q |
383 |
ttgttttccattcaattaatttactatc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
49082093 |
ttgttttccattcaattaatttactatc |
49082120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University