View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_17 (Length: 410)
Name: NF3425_high_17
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 15169333 - 15168959
Alignment:
| Q |
13 |
aatatagcatacaatacatgtaagaccaatgctttatnnnnnnnnnncttgaaatcgaaccgacaagacattctgatcatggttcaactgctttaaactt |
112 |
Q |
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| T |
15169333 |
aatatagcatacaatacatgtaagaccaatgctttataaaacaaa--cttgaaatggaaccgacaagacattctcatcatggttcaactgctttaaactg |
15169236 |
T |
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| Q |
113 |
tccgaaccaaaacgaaagaaggaaaaggtaaatacctcatcagagtcatgtgagaaatgagaattagagccagtgatcaagccagccatggtgtttgtgg |
212 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169235 |
tccaaaccaaaatgaaagaaggaaaaggtaaatacctcatcagagtcatgtgagaaatgagaattagagccagtgatcaagccagccatggtgtttgtgg |
15169136 |
T |
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| Q |
213 |
ccatggatggcaagaagccaaagatagttaaaaagaaaataggagttagaaggaagagtgtagaagaaaagagttatataagaaatggtaggttgagagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169135 |
ccatggatggcaagaagccaaagatagttaaaaagaaaataggagttagaaggaagagtgtagaagaaaagagttatataagaaatggtaggttgagagt |
15169036 |
T |
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| Q |
313 |
aaaacatcaaaatcatggttgtagatggaagagtagtgtgtaccaaactgtgagttggaaggtcataggtttgagtc |
389 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15169035 |
aaaacatcaaaatcatagttgtagatggaagattagtgtgtaccaaactgtgagttggagggtcataggtttgagtc |
15168959 |
T |
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