View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_high_19 (Length: 403)

Name: NF3425_high_19
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_high_19
NF3425_high_19
[»] chr5 (9 HSPs)
chr5 (80-250)||(30747796-30747966)
chr5 (127-250)||(30481548-30481671)
chr5 (307-388)||(30340179-30340260)
chr5 (307-388)||(30748025-30748106)
chr5 (307-377)||(30481726-30481796)
chr5 (95-238)||(29870405-29870539)
chr5 (91-157)||(30244267-30244333)
chr5 (95-158)||(29851514-29851577)
chr5 (309-341)||(29870580-29870612)
[»] chr4 (1 HSPs)
chr4 (309-341)||(20298402-20298434)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 80 - 250
Target Start/End: Original strand, 30747796 - 30747966
Alignment:
Q  80 ggaatagaccttgattatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtat 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30747796 ggaatagaccttgattatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtcttcgtcattgggtat 30747895  T
Q  180 gtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaattaaatccccac 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30747896 gtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaattaaatccccac 30747966  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 30481548 - 30481671
Alignment:
Q  127 gacccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtatgtttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatc 226  Q
    ||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||    
T  30481548 gacccattgtcacttcctccactccaaaagactgcgtcttcgtcattgggtatgtttgttccattaatcccgttatttgtcttgtgtgtcgacgccaatc 30481647  T
Q  227 ctaaccattcaattaaatccccac 250  Q
    ||||||||||||||||||||||||    
T  30481648 ctaaccattcaattaaatccccac 30481671  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 30340260 - 30340179
Alignment:
Q  307 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340260 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctg 30340179  T

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Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 30748025 - 30748106
Alignment:
Q  307 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748025 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctg 30748106  T

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Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 30481726 - 30481796
Alignment:
Q  307 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgta 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481726 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgta 30481796  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 238
Target Start/End: Original strand, 29870405 - 29870539
Alignment:
Q  95 tatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtcttcgtgattgggtatgtttgtt-ccattaa 193  Q
    ||||||||||||||||||||||||||| || |||| | ||||| | |||||||||| ||||||| |  ||||| | ||| |||| ||||||| |  ||||    
T  29870405 tatcaaaatcgcaatcctcgataccaccaccggactcgttgtcacctcctccactccaaaagacgttctcttcatcattaggtacgtttgttacggttaa 29870504  T
Q  194 tcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaa 238  Q
    |||          ||||||||||||||||||||||||||||||||    
T  29870505 tcc----------cttgtgtgttgaaggcaatcctaaccattcaa 29870539  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 30244333 - 30244267
Alignment:
Q  91 tgattatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaaga 157  Q
    |||| ||||||||||||||||||||| |||| ||||||| | ||||| | |||||||||| ||||||    
T  30244333 tgataatcaaaatcgcaatcctcgatgccacgactggactcgttgtcacctcctccactccaaaaga 30244267  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 29851514 - 29851577
Alignment:
Q  95 tatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagac 158  Q
    ||||||||||||||||||||||||||| || ||||  ||||||   |||||||||| |||||||    
T  29851514 tatcaaaatcgcaatcctcgataccaccaccggacttattgtcatctcctccactccaaaagac 29851577  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 29870580 - 29870612
Alignment:
Q  309 atgatgaagaaaatgacctgaattagaacattt 341  Q
    |||||||||||||| ||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaacattt 29870612  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 20298434 - 20298402
Alignment:
Q  309 atgatgaagaaaatgacctgaattagaacattt 341  Q
    |||||||||||||| ||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaacattt 20298402  T

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