View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_20 (Length: 401)
Name: NF3425_high_20
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 395
Target Start/End: Original strand, 26949120 - 26949514
Alignment:
| Q |
2 |
atatctggattgatgaataattctacnnnnnnnnagggat-aattcttggccaataggtggaatattcataattttcgctttcgtgcacttttgctatgt |
100 |
Q |
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| T |
26949120 |
atatctggattgatgaataattctacttttttt-agggatgaattcttggccaataggtggaatattcataattttcgctttcgtgtacttttgctatgt |
26949218 |
T |
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| Q |
101 |
agggttgatttatgnnnnnnnaccacacactcatacactttctattcaattattttctannnnnnnnnaatgtatgtgctataaatgatattgatagtat |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
26949219 |
agggttgatttatgccccccgaccacacactcatacactttctattcaattattttctatttttttttaatgtgtgtgctataaatgatattgatagtat |
26949318 |
T |
|
| Q |
201 |
ctttagatccaactaatcgagatcatcactatctttataagacaaaa-atattaaacacccctaaattttatacacttattcaacatattattctctctt |
299 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26949319 |
ctttagatccaactaattgagatcatcactatctttataagacaaaaaatattaaacacccctaaattttatacacttattcaacatattattctctctt |
26949418 |
T |
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| Q |
300 |
tatatatttctctttctatcacatcaataacatattacattactctgcattatctttttatctctcaaaatgtcaaatggtttttgatgtttatca |
395 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26949419 |
tatatatatctctttctatcacatcaacaacatattacattactctacattatctttttatctctcaaaatgtcaaatggtttttgatgtttatca |
26949514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 36424744 - 36424704
Alignment:
| Q |
262 |
taaattttatacacttattcaacatattattctctctttat |
302 |
Q |
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||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
36424744 |
taaattttatacacttatttaacattttattttctctttat |
36424704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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