View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_21 (Length: 398)
Name: NF3425_high_21
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 30671323 - 30670942
Alignment:
| Q |
11 |
tattaagacaaagacatagcatttaggacattcaatgtgccaaatatatatagtatatcacacacccttaaatatgccattgaaaaatctacctagctag |
110 |
Q |
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| T |
30671323 |
tattaagacaaagacatagcatttaggacattcaatgtgccaaatatatatagtatatcacacacccttaaatatgccactgaaaaatctacctagttag |
30671224 |
T |
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| Q |
111 |
gtatccaaattcttgttccataaccaatgaaaccaaatcaagagaaattcaaacatatgcaatacaatattcaggcaggttttttatgtgaagtacaagt |
210 |
Q |
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| T |
30671223 |
gtatccaaattcttgttccataaccaatgaaaccaaatcaagagaaattcaaacatatgcaatacaatattcaggcaggttttttatgtgaagtacaagt |
30671124 |
T |
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| Q |
211 |
gtaagctatgaagcccatcattagttaataacagattaag----taatatttgttgatcctaacctgaattaaagg-ttagtggtgtcaaactcactact |
305 |
Q |
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| T |
30671123 |
gtaagctatgaagtccatcattagttaataacagattaagtaattaatatttgttggtcctaacctgaattaaaggtttaatggtgtcaaactcactact |
30671024 |
T |
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| Q |
306 |
ttgatctaccacttaaattcatggacagagatcaatcttccctcttttggacaccattatttgcttcactttgttttcttct |
387 |
Q |
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| T |
30671023 |
ttgatctaccacttaaattcatggacagagatcaatcttccctcttttggacaccattatctgcttcactttgttttcttct |
30670942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 30718612 - 30718514
Alignment:
| Q |
10 |
atattaagacaaagacatagcatttaggacattcaatgtgccaa-atatatatagta--tatcacacacccttaaatatgccattgaaaaatctacctag |
106 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||| | |||| || || |||||| || ||||||| |||| |||||||||||||||||| |
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| T |
30718612 |
atattaagacaaagacataacatttaggacatacaatgtgccaatacatatttaataagtatcactca-ccttaaaaatgctattgaaaaatctacctag |
30718514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 30689208 - 30689167
Alignment:
| Q |
11 |
tattaagacaaagacatagcatttaggacattcaatgtgccaa |
53 |
Q |
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| T |
30689208 |
tattaagacaaagacata-catttaggacatacaatgtgccaa |
30689167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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