View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_23 (Length: 382)
Name: NF3425_high_23
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 37220146 - 37219788
Alignment:
| Q |
20 |
caattactataaatatgtgtgatatgttttaatttaagtagataaatccaaatatgtaagtacgaaaagtttattgtttaattcctatggatgcaggttg |
119 |
Q |
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| T |
37220146 |
caattactataaatatgtgtgatatgttttaatttaagtagataaatccaaatatgtaagtacgaaaagtttattgtttaattcctatggatgcaggttg |
37220047 |
T |
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| Q |
120 |
tgtgaggacatattcgtcaccttggaaagggtttacaattgactttgactttagagtaaaataaagaggggaatatgtggtaattgaaaaatataatatt |
219 |
Q |
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| T |
37220046 |
tgtgaggacatattcgtcaccttggaaagggtttacaattgactttgactttagagtaaaataaagaggggaatatgtggtaattgaaaaatataatatt |
37219947 |
T |
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| Q |
220 |
tataaaaatgtgatattctctgtaatttatcaagtatacaaggtcacaaaaagatatttgtattcgcaatagaacaagttggtgttgaataggtatgaaa |
319 |
Q |
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| T |
37219946 |
tataaaaatatgatattctctgaaatttatcaagtatacaaggtcacaaaaagatatttgtattcgcaatagaacaagttggtgttgaataggtatgaaa |
37219847 |
T |
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| Q |
320 |
aatatgttaagctgcaaatactcgtgttcgaacatatacaagtggttttcttctctctc |
378 |
Q |
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| T |
37219846 |
aatatgttaagctgcaaatactcgtgttcgaacatatacaagtggttttcttctctctc |
37219788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 37206616 - 37206552
Alignment:
| Q |
38 |
gtgatatgttttaatttaagtagataaatccaaatatgtaagtacgaaaagtttattgtttaattcc |
104 |
Q |
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| T |
37206616 |
gtgatatgttctaatttatgtagataaatccaaatatgtaagtac--aaagtttattttttaattcc |
37206552 |
T |
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