View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_high_24 (Length: 380)

Name: NF3425_high_24
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_high_24
NF3425_high_24
[»] chr4 (4 HSPs)
chr4 (18-372)||(54220205-54220559)
chr4 (193-307)||(31239859-31239973)
chr4 (193-307)||(31256356-31256470)
chr4 (206-313)||(31274780-31274887)
[»] chr3 (2 HSPs)
chr3 (193-305)||(16130579-16130691)
chr3 (57-114)||(16130769-16130826)
[»] chr5 (2 HSPs)
chr5 (193-305)||(17593989-17594101)
chr5 (217-265)||(9891799-9891847)
[»] chr7 (3 HSPs)
chr7 (193-305)||(14729386-14729498)
chr7 (217-265)||(1095059-1095107)
chr7 (50-92)||(14740784-14740826)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 54220205 - 54220559
Alignment:
Q  18 catgcatcatatatatcaattccttgcaccttaatgcagagcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaatctg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54220205 catgcatcatatatatcaattccttgcaccttaatgcagagcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaatctg 54220304  T
Q  118 ctaacttcaaattttggtggtgtaacccatcacaaaaatgaggaatttgaaaatcaaagaagagtaagtgatcgagtccacaagtgtttccactttttcg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54220305 ctaacttcaaattttggtggtgtaacccatcacaaaaatgaggaatttgaaaatcaaagaagagtaagtgatcgagtccacaagtgtttccactttttca 54220404  T
Q  218 ctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatcattcatgttacc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54220405 ctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatcattcatgttacc 54220504  T
Q  318 cgcattatgtctttgcacatctgttgaagagattgcaccaaccatgatctgtgct 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54220505 cgcattatgtctttgcacatctgttgaagagattgcaccaaccatgatctatgct 54220559  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 31239859 - 31239973
Alignment:
Q  193 gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt 292  Q
    |||||||| ||||||||||| || || |||||||| ||| ||||||||||||| |||||||  || |||||||||| |||||||||| |||| |||||||    
T  31239859 gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaagt 31239958  T
Q  293 cactaatcatatcat 307  Q
      ||||| |||||||    
T  31239959 tgctaatgatatcat 31239973  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 31256356 - 31256470
Alignment:
Q  193 gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt 292  Q
    |||||||| ||||||||||| || || |||||||| ||| ||||||||||||| |||||||  || |||||||||| |||||||||| |||| |||||||    
T  31256356 gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaagt 31256455  T
Q  293 cactaatcatatcat 307  Q
      ||||| |||||||    
T  31256456 tgctaatgatatcat 31256470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 313
Target Start/End: Original strand, 31274780 - 31274887
Alignment:
Q  206 tccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatc 305  Q
    ||||||| || ||||| | ||| ||| ||||| |||||| | |||| | |||||||||||||| |||||||||  |||||||||| |||||||| |||||    
T  31274780 tccacttctttgctaacacggaagttcttacaacatcttcgataggtagtaaagaaagaatatgaagaagaacaccctcaggtaaatcactaattatatc 31274879  T
Q  306 attcatgt 313  Q
     |||||||    
T  31274880 gttcatgt 31274887  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 16130691 - 16130579
Alignment:
Q  193 gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt 292  Q
    ||||||||||| |||||||| || |||| |||||| ||| ||||| |||||||||| |||| |||||||||||||| |||||||||| ||||||||||||    
T  16130691 gtccacaagtgcttccacttctttgctagtatggaagttcttacaacatctttggtcgggagtaaagaaagaatatgaagaagaacggcctcaggtaagt 16130592  T
Q  293 cactaatcatatc 305  Q
    |||||||||||||    
T  16130591 cactaatcatatc 16130579  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 16130826 - 16130769
Alignment:
Q  57 agcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaat 114  Q
    |||||||||||| || |||||||||| |  ||||||||||||||||| |||| |||||    
T  16130826 agcctttctatgcgagtagatttgtgcataagtcttccaactagatctaagaggcaat 16130769  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 17594101 - 17593989
Alignment:
Q  193 gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt 292  Q
    |||||||||| |||||||||| | ||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| |||||||||  |||| ||||| |    
T  17594101 gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaatt 17594002  T
Q  293 cactaatcatatc 305  Q
    |||||||||||||    
T  17594001 cactaatcatatc 17593989  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 9891799 - 9891847
Alignment:
Q  217 gctaatatggaggtttttacagcatctttggtagggactaaagaaagaa 265  Q
    ||||||||||| ||| ||||||||||||||||||||| ||| |||||||    
T  9891799 gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa 9891847  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 305
Target Start/End: Original strand, 14729386 - 14729498
Alignment:
Q  193 gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt 292  Q
    |||||||||| |||||||||| | ||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| |||||||||  |||| ||||| |    
T  14729386 gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaatt 14729485  T
Q  293 cactaatcatatc 305  Q
    |||| ||||||||    
T  14729486 cacttatcatatc 14729498  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 1095107 - 1095059
Alignment:
Q  217 gctaatatggaggtttttacagcatctttggtagggactaaagaaagaa 265  Q
    ||||||||||| ||| ||||||||||||||||||||| ||| |||||||    
T  1095107 gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa 1095059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 14740784 - 14740826
Alignment:
Q  50 aatgcagagcctttctatgtgattagatttgtgaagtagtctt 92  Q
    |||||| ||||||||||||||||| |||||||| |||||||||    
T  14740784 aatgcaaagcctttctatgtgattggatttgtgtagtagtctt 14740826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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