View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_high_27 (Length: 354)

Name: NF3425_high_27
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_high_27
NF3425_high_27
[»] chr2 (10 HSPs)
chr2 (100-335)||(43796740-43796975)
chr2 (18-100)||(43797039-43797121)
chr2 (103-165)||(12238527-12238589)
chr2 (124-165)||(17317159-17317200)
chr2 (104-143)||(32522090-32522129)
chr2 (100-143)||(40301354-40301397)
chr2 (100-163)||(42839361-42839424)
chr2 (100-141)||(32366154-32366195)
chr2 (132-172)||(2401708-2401748)
chr2 (123-171)||(12223971-12224019)
[»] scaffold0004 (1 HSPs)
scaffold0004 (100-163)||(227688-227751)
[»] chr8 (27 HSPs)
chr8 (105-164)||(9781196-9781255)
chr8 (100-164)||(28280690-28280754)
chr8 (100-166)||(1184762-1184828)
chr8 (100-163)||(2669630-2669693)
chr8 (103-164)||(34286607-34286668)
chr8 (100-164)||(31079207-31079271)
chr8 (103-165)||(28879038-28879100)
chr8 (127-165)||(35168361-35168399)
chr8 (100-140)||(2563363-2563403)
chr8 (132-164)||(14942391-14942423)
chr8 (99-163)||(35453392-35453456)
chr8 (100-159)||(402129-402188)
chr8 (104-143)||(30973991-30974030)
chr8 (100-143)||(42102109-42102152)
chr8 (100-143)||(42363357-42363400)
chr8 (132-166)||(2563323-2563357)
chr8 (128-165)||(18396916-18396953)
chr8 (136-165)||(30973955-30973984)
chr8 (100-140)||(218293-218333)
chr8 (100-140)||(694853-694893)
chr8 (100-140)||(699062-699102)
chr8 (100-140)||(731916-731956)
chr8 (100-140)||(855812-855852)
chr8 (100-140)||(11988202-11988242)
chr8 (104-140)||(19925433-19925469)
chr8 (104-140)||(37410957-37410993)
chr8 (104-140)||(43577226-43577262)
[»] chr3 (13 HSPs)
chr3 (104-164)||(38524069-38524129)
chr3 (103-163)||(37601071-37601131)
chr3 (103-164)||(43376678-43376737)
chr3 (125-165)||(45331361-45331401)
chr3 (104-143)||(3645305-3645344)
chr3 (104-143)||(20894505-20894544)
chr3 (104-143)||(29614196-29614235)
chr3 (136-165)||(2086782-2086811)
chr3 (100-141)||(4257342-4257383)
chr3 (136-165)||(4974277-4974306)
chr3 (108-165)||(19307817-19307874)
chr3 (100-165)||(45049415-45049480)
chr3 (124-164)||(29270472-29270512)
[»] scaffold0091 (1 HSPs)
scaffold0091 (104-171)||(2624-2691)
[»] chr4 (19 HSPs)
chr4 (102-169)||(22397348-22397415)
chr4 (103-158)||(43983426-43983481)
chr4 (103-165)||(7148752-7148814)
chr4 (104-165)||(2141621-2141682)
chr4 (103-164)||(26206398-26206459)
chr4 (109-173)||(48591474-48591538)
chr4 (105-165)||(54412093-54412153)
chr4 (100-143)||(2702756-2702799)
chr4 (104-143)||(15184549-15184588)
chr4 (115-158)||(55852998-55853041)
chr4 (103-141)||(52700588-52700626)
chr4 (100-141)||(9201655-9201696)
chr4 (124-165)||(9319170-9319211)
chr4 (103-164)||(52274164-52274225)
chr4 (124-164)||(825663-825703)
chr4 (136-164)||(2702806-2702834)
chr4 (109-165)||(28663408-28663464)
chr4 (100-136)||(35010220-35010256)
chr4 (104-164)||(43136662-43136722)
[»] chr1 (18 HSPs)
chr1 (100-174)||(8410120-8410194)
chr1 (103-159)||(6337800-6337856)
chr1 (103-163)||(48819281-48819341)
chr1 (100-143)||(15235201-15235244)
chr1 (100-143)||(15791386-15791429)
chr1 (108-170)||(28870199-28870261)
chr1 (100-134)||(29333428-29333462)
chr1 (102-143)||(37148136-37148177)
chr1 (102-143)||(37156961-37157002)
chr1 (100-143)||(22088452-22088495)
chr1 (100-143)||(32497312-32497355)
chr1 (100-143)||(51162271-51162314)
chr1 (124-166)||(37431145-37431187)
chr1 (100-141)||(41003391-41003432)
chr1 (100-140)||(32810875-32810915)
chr1 (123-159)||(38781059-38781095)
chr1 (124-164)||(45267446-45267486)
chr1 (100-163)||(51409748-51409811)
[»] chr6 (6 HSPs)
chr6 (100-165)||(2034270-2034335)
chr6 (104-165)||(32165305-32165366)
chr6 (134-165)||(8011135-8011166)
chr6 (100-143)||(10184370-10184413)
chr6 (103-164)||(10755324-10755385)
chr6 (132-176)||(17914901-17914945)
[»] chr5 (11 HSPs)
chr5 (103-165)||(40696981-40697043)
chr5 (110-165)||(1942990-1943045)
chr5 (100-143)||(15413994-15414037)
chr5 (100-163)||(38461323-38461386)
chr5 (103-165)||(42706776-42706838)
chr5 (100-164)||(28357333-28357397)
chr5 (104-143)||(5203478-5203517)
chr5 (100-143)||(25332279-25332322)
chr5 (100-143)||(33757090-33757133)
chr5 (103-164)||(41534604-41534665)
chr5 (100-140)||(26003002-26003042)
[»] chr7 (12 HSPs)
chr7 (103-164)||(47511024-47511085)
chr7 (100-164)||(29378626-29378690)
chr7 (100-143)||(24371447-24371490)
chr7 (103-164)||(43818923-43818982)
chr7 (104-141)||(18260890-18260927)
chr7 (94-143)||(21027548-21027597)
chr7 (103-164)||(30094775-30094836)
chr7 (103-141)||(35809094-35809132)
chr7 (100-142)||(42083458-42083500)
chr7 (106-164)||(46743931-46743989)
chr7 (132-164)||(22032729-22032761)
chr7 (137-165)||(35809056-35809084)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 100 - 335
Target Start/End: Complemental strand, 43796975 - 43796740
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796975 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 43796876  T
Q  200 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaagctcattcttgccattcccatttga 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796875 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaagctcattcttgccattcccatttga 43796776  T
Q  300 tgatgattcaccaacacaaaagttcttgtcataacg 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  43796775 tgatgattcaccaacacaaaagttcttgtcataacg 43796740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 43797121 - 43797039
Alignment:
Q  18 gtaataaaaagcagaaagcatgcaaataatatattgcattaccacctcggcctgtttggattgagtcaattttgagcttacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  43797121 gtaataaaaagcagaaagcatgcaaataatatattgcattaccacctgggcctgtttggattgagtctattttgagcttacta 43797039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 12238527 - 12238589
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  12238527 cttataaataatacattaatgcttatttatttgcataagctctaaaataagccaatcccaacg 12238589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 17317200 - 17317159
Alignment:
Q  124 cttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  17317200 cttatttatttacataagctcaaaaataagtcaatccaaacg 17317159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 32522090 - 32522129
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  32522090 ttataaataatacataaaaacttatttatttacataagct 32522129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 40301397 - 40301354
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  40301397 aaacttataaataatacataaaaacttatttatttgcataagct 40301354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 42839361 - 42839424
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 163  Q
    |||||||| |||||||||| || |||||||||| ||||||||||| | ||||| |||| |||||    
T  42839361 aaacttatgaataatacataaaaacttatttatctacataagctcaataataaaccaacccaaa 42839424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 32366195 - 32366154
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataag 141  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  32366195 aaacttataaataatacataaaaacttatttatttgcataag 32366154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 2401708 - 2401748
Alignment:
Q  132 tttacataagctctaaaataagccaatccaaacgacccctt 172  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  2401708 tttatataagctctaaaataagctaatccaaacgagccctt 2401748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 12223971 - 12224019
Alignment:
Q  123 acttatttatttacataagctctaaaataagccaatccaaacgacccct 171  Q
    ||||| || ||| ||||||||| ||||||||||||||||||||| ||||    
T  12223971 acttaattctttgcataagctcaaaaataagccaatccaaacgaaccct 12224019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 227751 - 227688
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 163  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  227751 aaacttataaatactacattaatgcttatttattcgcataagctctaaaataagccaatccaaa 227688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 9781255 - 9781196
Alignment:
Q  105 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  9781255 tataaataatacattaatgcttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 28280754 - 28280690
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||||    
T  28280754 aaacttataaataatacataaatgcatatttatttgcataagctctaaaataagctaatccaaac 28280690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 1184828 - 1184762
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacga 166  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||    
T  1184828 aaacttttaaatgatacattaatgcttatttatttgcataagctttaaaataagccaattcaaacga 1184762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 2669693 - 2669630
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 163  Q
    |||||||||||||||||||||   ||||||||||| |||||||| |||||||| ||||||||||    
T  2669693 aaacttataaataatacattagagcttatttatttgcataagctataaaataaaccaatccaaa 2669630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 34286607 - 34286668
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||| |||||||||| ||  ||||||||||||||||||||| |||||||| ||||||||||    
T  34286607 cttatgaataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 31079207 - 31079271
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||| ||||||||||| ||| | ||||||||  ||||||||||||||||||| |||||||||    
T  31079207 aaacttaaaaataatacataaatgcatatttattaccataagctctaaaataagctaatccaaac 31079271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 28879100 - 28879038
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||| ||||||    
T  28879100 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaattcaaacg 28879038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 35168399 - 35168361
Alignment:
Q  127 atttatttacataagctctaaaataagccaatccaaacg 165  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  35168399 atttatttacataagctcaaaaataagccaatccaaacg 35168361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 2563403 - 2563363
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  2563403 aaacttataaataatacattaatatttatttatttgcataa 2563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 14942423 - 14942391
Alignment:
Q  132 tttacataagctctaaaataagccaatccaaac 164  Q
    |||||||||||||||||||||||||||||||||    
T  14942423 tttacataagctctaaaataagccaatccaaac 14942391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 35453456 - 35453392
Alignment:
Q  99 taaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 163  Q
    ||||||||| |||||||||| ||  ||||||||||| ||||||||  ||||||||||||| ||||    
T  35453456 taaacttatgaataatacataaaagcttatttatttgcataagctaaaaaataagccaattcaaa 35453392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 402129 - 402188
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 159  Q
    ||||||||||||||||||| || |||||||||||||| | ||||  |||||||| |||||    
T  402129 aaacttataaataatacataaaaacttatttatttacgttagctaaaaaataagacaatc 402188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 30974030 - 30973991
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  30974030 ttataaataatacattaatgcttctttatttacataagct 30973991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 42102152 - 42102109
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42102152 aaacttataaataatacataaaaacttatttatttgcataagct 42102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 42363357 - 42363400
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42363357 aaacttataaataatacataaaaacttatttatttgcataagct 42363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 2563357 - 2563323
Alignment:
Q  132 tttacataagctctaaaataagccaatccaaacga 166  Q
    ||||||||| |||||||||||||||||||||||||    
T  2563357 tttacataacctctaaaataagccaatccaaacga 2563323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 18396953 - 18396916
Alignment:
Q  128 tttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  18396953 tttatttgcataagctcaaaaataagccaatccaaacg 18396916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 30973984 - 30973955
Alignment:
Q  136 cataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||||||||||||||||||||||    
T  30973984 cataagctctaaaataagccaatccaaacg 30973955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 218293 - 218333
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  218293 aaacttataaataatacataaaaatttatttatttacataa 218333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 694853 - 694893
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  694853 aaacttataaataatacataaaaatttatttatttacataa 694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 699062 - 699102
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  699062 aaacttataaataatacataaaaatttatttatttacataa 699102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 731916 - 731956
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  731916 aaacttataaataatacataaaaatttatttatttacataa 731956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 855812 - 855852
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  855812 aaacttataaataatacataaaaatttatttatttacataa 855852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 11988242 - 11988202
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  11988242 aaacttataaataatacataaaaacttatttatttgcataa 11988202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 19925433 - 19925469
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  19925433 ttataaataatacattaatgcttatttatttgcataa 19925469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 37410957 - 37410993
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37410957 ttataaataatacataaaaacttatttatttacataa 37410993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 43577262 - 43577226
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataa 140  Q
    |||||||||||||||||||| |||||||||| |||||    
T  43577262 ttataaataatacattaatatttatttatttgcataa 43577226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 38524129 - 38524069
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||    
T  38524129 ttataaataatacattaatacttatttatttgcataaactctaaaataagttaatccaaac 38524069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 37601071 - 37601131
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 163  Q
    |||||||||||||||||||   |||||||||| |||||||||||||||||| |||||||||    
T  37601071 cttataaataatacattaacgtttatttatttgcataagctctaaaataagtcaatccaaa 37601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 43376737 - 43376678
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||||||||||| ||  |||||||| |||||||| |||||||||| |||||||||    
T  43376737 cttataaataatacattaagac--atttatttgcataagctgtaaaataagctaatccaaac 43376678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 45331361 - 45331401
Alignment:
Q  125 ttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  45331361 ttatttatttacataagctaaaaaataagccaatccaaacg 45331401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 3645344 - 3645305
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  3645344 ttataaataatacataaaaacttatttatttacataagct 3645305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 20894544 - 20894505
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  20894544 ttataaataatacataaaaacttatttatttacataagct 20894505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 29614235 - 29614196
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  29614235 ttataaataatacataaaaacttatttatttacataagct 29614196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 2086782 - 2086811
Alignment:
Q  136 cataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||||||||||||||||||||||    
T  2086782 cataagctctaaaataagccaatccaaacg 2086811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 4257342 - 4257383
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataag 141  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  4257342 aaacttataaataatacataaaaacttatttatttgcataag 4257383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 4974306 - 4974277
Alignment:
Q  136 cataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||||||||||||||||||||||    
T  4974306 cataagctctaaaataagccaatccaaacg 4974277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 19307874 - 19307817
Alignment:
Q  108 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||||||| ||||| ||||||||||||| ||| |||||||||| |  ||||||||||    
T  19307874 aaataatactttaatgcttatttatttacgtaaactctaaaatatgttaatccaaacg 19307817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 45049415 - 45049480
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||| |||| |||||| ||| |||||||  |||| || ||||||||| |||||||||||    
T  45049415 aaacttataaacaatatattaatgcttgtttatttgtataaactttaaaataagtcaatccaaacg 45049480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 29270472 - 29270512
Alignment:
Q  124 cttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||| ||||||||  |||||||||||||||||||    
T  29270472 cttatttatttgcataagctaaaaaataagccaatccaaac 29270512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 2624 - 2691
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccct 171  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| |||||| |||||    
T  2624 ttataaataatacattaatacttctttatttgcataaactctaaaataagtcaatacaaacggcccct 2691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 22397348 - 22397415
Alignment:
Q  102 acttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccc 169  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||  |||| ||||||||||    
T  22397348 acttataaataatacattaatatttatttatttgtataagctctaaaataaatcaattcaaacgaccc 22397415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 43983426 - 43983481
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaat 158  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  43983426 cttataaataatacattaatgcttatttatttgtataagctctaaaataagccaat 43983481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 7148814 - 7148752
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  7148814 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 7148752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 2141682 - 2141621
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    |||||||||| |||| ||  ||||||||||| ||||||||||||||||||| ||| ||||||    
T  2141682 ttataaataacacataaaagcttatttatttgcataagctctaaaataagctaattcaaacg 2141621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 26206398 - 26206459
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    |||||||||||||||| || || ||||||||| ||||| ||||||||||||  |||||||||    
T  26206398 cttataaataatacataaagacatatttatttgcataaactctaaaataagataatccaaac 26206459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 48591474 - 48591538
Alignment:
Q  109 aataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccctta 173  Q
    ||||||| || || |||||||||||| |||||||||  |||||||||||||| ||||| ||||||    
T  48591474 aataatatataaaaacttatttatttgcataagctcagaaataagccaatcctaacgaaccctta 48591538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 54412093 - 54412153
Alignment:
Q  105 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    |||||||||||||| || | |||||||||| |||||| |  ||||||||||||||||||||    
T  54412093 tataaataatacataaaaatttatttatttgcataagttaaaaaataagccaatccaaacg 54412153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 2702756 - 2702799
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    |||||||||||||||||| |||||||||||||| | ||||||||    
T  2702756 aaacttataaataatacactaatacttatttatgtgcataagct 2702799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 15184588 - 15184549
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15184588 ttataaataatacataaaaacttatttatttacataagct 15184549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 55853041 - 55852998
Alignment:
Q  115 acattaatacttatttatttacataagctctaaaataagccaat 158  Q
    ||||||||||||||||||||||||||  |||||||||| |||||    
T  55853041 acattaatacttatttatttacataaattctaaaataaaccaat 55852998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 52700588 - 52700626
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataag 141  Q
    |||||||||||||||| || |||||||||||||||||||    
T  52700588 cttataaataatacataaagacttatttatttacataag 52700626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 9201696 - 9201655
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataag 141  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  9201696 aaacttataaataatacataaaaacttatttatttgcataag 9201655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 9319170 - 9319211
Alignment:
Q  124 cttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  9319170 cttatttatttacataagctaaaaaataagccaaaccaaacg 9319211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 52274164 - 52274225
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||| |||||||||| ||   |||||||||| ||||||||| ||||||||||||| |||||    
T  52274164 cttatcaataatacataaaagtttatttatttgcataagctcaaaaataagccaattcaaac 52274225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 825703 - 825663
Alignment:
Q  124 cttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  825703 cttatttatttgcataagctcaaaaagaagccaatccaaac 825663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 2702806 - 2702834
Alignment:
Q  136 cataagctctaaaataagccaatccaaac 164  Q
    |||||||||||||||||||||||||||||    
T  2702806 cataagctctaaaataagccaatccaaac 2702834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 28663464 - 28663408
Alignment:
Q  109 aataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    |||||||||| ||  || |||||||| ||||||||| |||||||| |||||||||||    
T  28663464 aataatacataaaagctcatttatttgcataagctcaaaaataagtcaatccaaacg 28663408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 35010256 - 35010220
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttac 136  Q
    ||||||||||||||||||| || ||||||||||||||    
T  35010256 aaacttataaataatacataaaaacttatttatttac 35010220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 43136662 - 43136722
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    |||| ||||| |||| || |||||||||||  ||||||||| |||||||| ||||||||||    
T  43136662 ttatgaataacacataaagacttatttattcgcataagctcaaaaataagtcaatccaaac 43136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 8410194 - 8410120
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaa 174  Q
    |||||||| |||||||||| || |||||||||||| |||| |||||||||||||| ||| ||||||| |||||||    
T  8410194 aaacttatgaataatacataaaaacttatttatttgcataggctctaaaataagctaattcaaacgagcccttaa 8410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 6337800 - 6337856
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 159  Q
    ||||| |||||||||| ||  |||||||||||||||||||||||||||||| |||||    
T  6337800 cttatgaataatacataaaagcttatttatttacataagctctaaaataagtcaatc 6337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 48819341 - 48819281
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 163  Q
    ||||| |||||||||||||  || |||||||| ||||||||| ||||||||||||||||||    
T  48819341 cttatgaataatacattaaagctcatttatttgcataagctcaaaaataagccaatccaaa 48819281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 15235201 - 15235244
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15235201 aaacttataaataatacataaaaacttatttatttacataagct 15235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 15791429 - 15791386
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15791429 aaacttataaataatacataaaaacttatttatttacataagct 15791386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 28870261 - 28870199
Alignment:
Q  108 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccc 170  Q
    ||||||||||| |||  |||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  28870261 aaataatacataaatgtttatttatttgcataagctcaaaaataagccaatctaaacgccccc 28870199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 29333462 - 29333428
Alignment:
Q  100 aaacttataaataatacattaatacttatttattt 134  Q
    |||||||||||||||||||||||||||||||||||    
T  29333462 aaacttataaataatacattaatacttatttattt 29333428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 37148136 - 37148177
Alignment:
Q  102 acttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37148136 acttataaataatacattaatgcttatttatttgcataagct 37148177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 37156961 - 37157002
Alignment:
Q  102 acttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37156961 acttataaataatacattaatgcttatttatttgcataagct 37157002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 22088452 - 22088495
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    |||||| |||||||||||| || |||||||||||||||||||||    
T  22088452 aaacttgtaaataatacataaaaacttatttatttacataagct 22088495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 32497312 - 32497355
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  32497312 aaacttataaataatacataaaaacttatttatttgcataagct 32497355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 51162314 - 51162271
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||    
T  51162314 aaacttgtaaataatacattaatgcttatttatttgcataagct 51162271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 37431187 - 37431145
Alignment:
Q  124 cttatttatttacataagctctaaaataagccaatccaaacga 166  Q
    ||||||||||| || |||||| |||||||||||||||||||||    
T  37431187 cttatttatttgcacaagctcaaaaataagccaatccaaacga 37431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 41003432 - 41003391
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataag 141  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  41003432 aaacttataaataatacataaaaacttatttatttgcataag 41003391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 32810915 - 32810875
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  32810915 aaacttataaataatacatgaaggcttatttatttacataa 32810875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 38781095 - 38781059
Alignment:
Q  123 acttatttatttacataagctctaaaataagccaatc 159  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  38781095 acttatttatttgcataagctcaaaaataagccaatc 38781059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 45267486 - 45267446
Alignment:
Q  124 cttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||| ||||||||| |||||||| ||||||||||    
T  45267486 cttatttatttgcataagctcaaaaataagtcaatccaaac 45267446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 51409748 - 51409811
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagcc-aatccaaa 163  Q
    |||||||| ||||||||||  | |||||||||||| ||||||||| |||||||||| ||||||||    
T  51409748 aaacttatgaataatacatacaaacttatttatttgcataagctc-aaaataagcctaatccaaa 51409811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 2034270 - 2034335
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||||||||||| ||  ||||||||||| ||||||||| |||| |||||||||||||||    
T  2034270 aaacttataaataatacataaaagcttatttatttgcataagctcaaaaacaagccaatccaaacg 2034335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 32165305 - 32165366
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||||||| || |||||||||||| ||||| ||||||||||||| ||||||||||    
T  32165305 ttataaataatacataaaaacttatttattttcataaactctaaaataagctaatccaaacg 32165366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 8011135 - 8011166
Alignment:
Q  134 tacataagctctaaaataagccaatccaaacg 165  Q
    ||||||||||||||||||||||||||||||||    
T  8011135 tacataagctctaaaataagccaatccaaacg 8011166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 10184370 - 10184413
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    |||||||||||||||| || || |||||||||||||||||||||    
T  10184370 aaacttataaataatagataaaaacttatttatttacataagct 10184413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 10755324 - 10755385
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||  |||||||||||||||||||    
T  10755324 cttatgaataatacgtaaaagcttatttatttgcataagctaaaaaataagccaatccaaac 10755385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 17914945 - 17914901
Alignment:
Q  132 tttacataagctctaaaataagccaatccaaacgaccccttaact 176  Q
    |||| |||||||||||||||||  ||||||||||| |||||||||    
T  17914945 tttatataagctctaaaataagttaatccaaacgagcccttaact 17914901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 40697043 - 40696981
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    |||||||||||||||| || |||||||||||| ||||||||| |||||||| |||| ||||||    
T  40697043 cttataaataatacataaaaacttatttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 1943045 - 1942990
Alignment:
Q  110 ataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||    
T  1943045 ataatacataaaaacttatttacttgcataagctcaaaaataagccaatccaaacg 1942990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 15414037 - 15413994
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  15414037 aaacttatcaataatacattaatacttatttatttgcataagct 15413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 38461323 - 38461386
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 163  Q
    ||||||||||||||||||| ||  |||||||||||  |||||||||||||||||  ||||||||    
T  38461323 aaacttataaataatacataaaggcttatttatttttataagctctaaaataagttaatccaaa 38461386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 42706838 - 42706776
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 165  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  42706838 cttatgaataatacttaaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 42706776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 28357397 - 28357333
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    |||||||||||||||||||  |  | ||||||||| |||||||| |||||||||| |||||||||    
T  28357397 aaacttataaataatacatataggcatatttatttgcataagctttaaaataagctaatccaaac 28357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 5203478 - 5203517
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  5203478 ttataaataatacataaatacttatttatttgcataagct 5203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 25332279 - 25332322
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||    
T  25332279 aaacttataaataatatattaatgcttatttatttgcataagct 25332322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 33757133 - 33757090
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  33757133 aaacttataaataatacataaaaacttatttatttgcataagct 33757090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 41534665 - 41534604
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||| |||||||||| ||  ||||||||||| ||||| ||  |||||||||||||||||||    
T  41534665 cttatgaataatacataaaagcttatttatttgcataatctgaaaaataagccaatccaaac 41534604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 26003042 - 26003002
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataa 140  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  26003042 aaacttataaataatacataaaaacttatttatttgcataa 26003002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 47511085 - 47511024
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| |||||||||||||||||||    
T  47511085 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 29378690 - 29378626
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||| ||||||||||||| ||  ||||||||||| ||||||||| || ||||||||||||||||    
T  29378690 aaactcataaataatacataaaagcttatttatttgcataagctcaaagataagccaatccaaac 29378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 24371447 - 24371490
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagct 143  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  24371447 aaacttataaataatacattaaaacttatttatttgcataagct 24371490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 43818923 - 43818982
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    |||||||||||||||| || ||  |||||||| ||||||||||||||||||| |||||||||    
T  43818923 cttataaataatacataaagac--atttatttgcataagctctaaaataagctaatccaaac 43818982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 18260890 - 18260927
Alignment:
Q  104 ttataaataatacattaatacttatttatttacataag 141  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18260890 ttataactaatacattaatacttatttatttacataag 18260927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 21027548 - 21027597
Alignment:
Q  94 cttactaaacttataaataatacattaatacttatttatttacataagct 143  Q
    |||| |||||||||||||||||||| || |||||||| ||||||||||||    
T  21027548 cttaataaacttataaataatacataaaaacttatttgtttacataagct 21027597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 30094775 - 30094836
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||||| ||||| ||  ||||||||  |||||||||||||||||| |||||||||    
T  30094775 cttataaataatatattaagacacatttatttgtataagctctaaaataagctaatccaaac 30094836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 35809132 - 35809094
Alignment:
Q  103 cttataaataatacattaatacttatttatttacataag 141  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  35809132 cttataaataatacattaatgcttatttatttgcataag 35809094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 42083458 - 42083500
Alignment:
Q  100 aaacttataaataatacattaatacttatttatttacataagc 142  Q
    |||||||| |||||||||| || ||||||||||||||||||||    
T  42083458 aaacttatgaataatacataaaaacttatttatttacataagc 42083500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 46743989 - 46743931
Alignment:
Q  106 ataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||||| ||  ||||||||||| ||| ||||| ||| |||||||||||||||    
T  46743989 ataaataatacataaaatcttatttatttgcatgagctcaaaagtaagccaatccaaac 46743931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 22032761 - 22032729
Alignment:
Q  132 tttacataagctctaaaataagccaatccaaac 164  Q
    ||||||||||||||||||||||| |||||||||    
T  22032761 tttacataagctctaaaataagctaatccaaac 22032729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 35809084 - 35809056
Alignment:
Q  137 ataagctctaaaataagccaatccaaacg 165  Q
    |||||||||||||||||||||||||||||    
T  35809084 ataagctctaaaataagccaatccaaacg 35809056  T

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