View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_28 (Length: 353)
Name: NF3425_high_28
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 36227875 - 36228203
Alignment:
| Q |
17 |
acattttacaaaacaaaatgaacatgaaactaaactcatctttaacaacactcaccaacacttcaaaaaacccatttttcagatttatacattactccat |
116 |
Q |
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| T |
36227875 |
acattttacaaaacaaaatgaacatgaaactaaactcatctttaacaacactcaccaacacttcaaaaaacccatttttcagatttatacattactccat |
36227974 |
T |
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| Q |
117 |
ttcactcaaattcatttcaaacatcgttttatgtgttcctcacattgcacacaacctgtttgataaaattcctcatagacctacaacccttaaagagcat |
216 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36227975 |
ttcactcaaattcatttccaacaccgttttatgtgttcctcacattgcacacaacctgtttgataaaattcctcatagacctacaacccttaaagagcat |
36228074 |
T |
|
| Q |
217 |
aaccaattactctttagttactcgcgcgataaacaaaccaaagaagcccttaacttatttgtttctcttcttcattcgtctttacaacccgacgaatcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36228075 |
aaccaattactctttagttactcgcgcgataaacaaaccaaagaagcccttaacttatttgtttctcttcttcattcgtctttacaacccgacgaatcca |
36228174 |
T |
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| Q |
317 |
cattgtcgtgtgttttcaatatctgtgct |
345 |
Q |
| |
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|||||||||||||||||||||| |||||| |
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| T |
36228175 |
cattgtcgtgtgttttcaatatttgtgct |
36228203 |
T |
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