View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_3 (Length: 687)
Name: NF3425_high_3
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 19 - 677
Target Start/End: Complemental strand, 45069318 - 45068651
Alignment:
| Q |
19 |
atagtcatcaattcatcatcaatgttaataatagtagagattgtct-------gcaatagtataatatttatttcttaaaaaagaaaacgttaataatat |
111 |
Q |
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| T |
45069318 |
atagtcatcaattcatcatcaatgttaataacagtagagtttgtctaacatgtgcaatagtataatatttatttcttaaaaaagaaaacgttaataatat |
45069219 |
T |
|
| Q |
112 |
tttgtatactcaaccatctgcatgagcagcgtggacaagtaacagtaacactcaaacaagttcacatgagtatgtcacagaaagaaccaaaaatgtacta |
211 |
Q |
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| T |
45069218 |
tttgtatactcaaccatctgcatgagcagcgtggacaagtaatagtaacactcaaacaagttcacatgagtaagtcacagaaagaaccaaaaatgtacta |
45069119 |
T |
|
| Q |
212 |
atcttttttactgttttctatcctgttcatcctattccacgagaaaaacaatccaaaccttatcattaacctttaaataaagttataacaatctcatgga |
311 |
Q |
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| T |
45069118 |
atcttttttactgttttctatcctgttcatcctattccacgagaaaaacaatccaaaccttatcattaacctttaaataaagttataacaatctcatgga |
45069019 |
T |
|
| Q |
312 |
aatcataaactgacagctacttcttgtcataaagcaaccttaatatccatgtcttatactagttgaaactaaaagacaaacaaaaccgataaccattgaa |
411 |
Q |
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| T |
45069018 |
aatcataaactgacagctacttcttgtcataaagcaaccttaatatccatgtcttatactagttgaaactaaaagacaaacaaaaccgataaccattgaa |
45068919 |
T |
|
| Q |
412 |
cagaatcaatcatccaatcctttattcatttttaatcaattcccatttttcattcttcatacttttacgtgtgga--gtgtagtgtagacagtgtacatt |
509 |
Q |
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| T |
45068918 |
cagaatcaatcatccactcctttattcatttttaatcaattcccatttttcattcttcatacttttacgtgtggagtgtgtagtgtagacagtgtacatt |
45068819 |
T |
|
| Q |
510 |
cttggtttcaatggataccagtagtgtatgtctactactacggtttttacttttgtttgttgtgtgtatcacttcctctgaatcaaattatataagatac |
609 |
Q |
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| T |
45068818 |
cttggtttcaatggataccagtagtgtatgtctactactacggtttttacttttgtttgttgtgtgtatcacttcctctgaatcaaattatataagatac |
45068719 |
T |
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| Q |
610 |
aatactaactcaaccattgttcctgggaagctcaatgttcacctagtccctcatagtcatgatgatgt |
677 |
Q |
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| T |
45068718 |
aatactaactcaaccattgttcctgggaagctcaatgttcacttagtccctcatagtcatgatgatgt |
45068651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 542 - 672
Target Start/End: Complemental strand, 3738353 - 3738215
Alignment:
| Q |
542 |
tactactacggtttttacttttgtttgttgtgtgtatcacttcctctgaatcaaattatataagatacaatactaac--------tcaaccattgttcct |
633 |
Q |
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|||| |||||||||||||| || || ||||||||||| | ||| |||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
3738353 |
tactgctacggtttttactcttcttggttgtgtgtattatttcttctgaatcaaattacataagatacaatactaactcaagtactcaaccattgttcct |
3738254 |
T |
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| Q |
634 |
gggaagctcaatgttcacctagtccctcatagtcatgat |
672 |
Q |
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| T |
3738253 |
gggaagctcaatgttgacttggtccctcatggtcatgat |
3738215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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