View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_32 (Length: 327)
Name: NF3425_high_32
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 39360209 - 39359907
Alignment:
| Q |
8 |
tgagatgaagacccatgattagttgaggcatcgtcaataggttgaggagaagcaggagaagaaggagaacaatagtagagagaatcaatagggttcttgg |
107 |
Q |
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| T |
39360209 |
tgagatgaagacccatgattagttgaggcatcgtcaataggttgaggagaagcaggagaagaaggagaacaatagtagagagaatcaacagggttcttgg |
39360110 |
T |
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| Q |
108 |
agtataggtttgagagtttgtctcttaaacaagaggaacaaacccctggtaattgtttatcatttggatgttctttgcaccttaatcttgttgcttctaa |
207 |
Q |
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| T |
39360109 |
agtataggtttgagagtttgtctcttaaacaagaggaacaaacacctggtaattgtttatcatttggatgttctttgcaccttaatcttgttgcttctaa |
39360010 |
T |
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| Q |
208 |
ttcgcaccacttcatctgattcattattgctaacttttttgattggatacgtaaatcctcgtgtgtattgtttatttatacaacattggtcaaaggaaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39360009 |
ttcgcaccacttcatctgattcattattgctaacttttttgattggatacgtaaatcctcgtgtgtattgtttatttatacaacattggtcaaaggaaat |
39359910 |
T |
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| Q |
308 |
aat |
310 |
Q |
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||| |
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| T |
39359909 |
aat |
39359907 |
T |
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