View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_35 (Length: 313)
Name: NF3425_high_35
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 3285959 - 3285679
Alignment:
| Q |
14 |
atattccattgaaacaattggctattgtgtatagtatcggaagtcaattgatacacaaaattttgcgtcgtttataccaaacatggaaacatacgatgag |
113 |
Q |
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| T |
3285959 |
atattccattgaaacaattggctattgtgtatagcatcggaagtcaattgatacacaaaattttgcgttgtttataccaaacatggaaacatacgatgag |
3285860 |
T |
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| Q |
114 |
ggacagatgactatataattgattcttagaacatatgtaatcaattgggaagaaacattgattgaatagttgacgacgtcttatcccatcactagnnnnn |
213 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3285859 |
gggcagatgactatataattgattcttagaacatatgtaatcaattgagaagaaacattgattgaatagttgacgacgtcttatcccatcactag--ttt |
3285762 |
T |
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| Q |
214 |
nnnnnnnnnnnnnacaactcttttcataaacagtttctaaaacgaccctttttacaaccattaatttagaataatgcaaactt |
296 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3285761 |
tttttttttttttacaactcttttcataaactgtttctaaaacgaccctttttacaaccattaatttagaataatgcaaactt |
3285679 |
T |
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