View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_40 (Length: 287)
Name: NF3425_high_40
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_40 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 24142885 - 24142597
Alignment:
| Q |
1 |
gatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacccaataccatcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24142885 |
gatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctaaatgacgtgtttgtgctcacccaataccatcttc |
24142786 |
T |
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| Q |
101 |
atgtggtaagattctacatttttaacttttttgtacta--nnnnnnnnnnatgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24142785 |
atgtggtaagattctacatttttaacttttttgtactattttttttttttatgtaagctgaaggctatgtttatttttatttgtgtaaactaacgtgaat |
24142686 |
T |
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| Q |
199 |
cgtatcatgatattaannnnnnnnnnnnncatttctgcagtggcgtgtcaacttaatgtgaataatggaaaaaagctactgctatacaa |
287 |
Q |
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| T |
24142685 |
cgtatcatgatattaattttttgttttttcatttctgcagtggcgtgtcaacttaatgtgaataacggaaaaaagctactgctatacaa |
24142597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 16362888 - 16362953
Alignment:
| Q |
149 |
atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatattaa |
214 |
Q |
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| T |
16362888 |
atgtaaactgaatgctatgattatttttatttatgtaaactgaattgaatcatatcatgatattaa |
16362953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 9030704 - 9030758
Alignment:
| Q |
149 |
atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatcgtat |
203 |
Q |
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| T |
9030704 |
atgtaagctgaaggctatgtttatttttatttttgtaaactggattgaatcgtat |
9030758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 1771775 - 1771830
Alignment:
| Q |
159 |
aaggctatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatattaa |
214 |
Q |
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| T |
1771775 |
aaggctatgtttaattttatataagtaaactaaactgaatcgtgtcatgatattaa |
1771830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 9030477 - 9030564
Alignment:
| Q |
19 |
gaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacccaataccatcttcatgtgg |
106 |
Q |
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| T |
9030477 |
gaggtggaggtggagccacaaccgctaaatgaatatcttgatggcgcacgtgacttgtctgtgctcacccaataccatcttcatgtgg |
9030564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 9030630 - 9030680
Alignment:
| Q |
149 |
atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatc |
199 |
Q |
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| T |
9030630 |
atgtaaactgaaggttatgtttatttttatttatgtaaactgaattgaatc |
9030680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 42229445 - 42229494
Alignment:
| Q |
164 |
tatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatatta |
213 |
Q |
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| T |
42229445 |
tatgtttatttttatttatgtaaacttaactgaatcgtatcatgctatta |
42229494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 5979492 - 5979524
Alignment:
| Q |
157 |
tgaaggctatgtttatttttatttgtgtaaact |
189 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
5979492 |
tgaaggctatgtttatttttatttatgtaaact |
5979524 |
T |
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