View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_5 (Length: 541)
Name: NF3425_high_5
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 24998062 - 24998480
Alignment:
| Q |
1 |
tctctctacccgtttcttttctgttttcaatcccctgagagtctaccatgtaatgcgtacccttaactatttaaacatttaaccatggtccttaactatg |
100 |
Q |
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| T |
24998062 |
tctctctacccgtttcttttctgttttcaatcccctgatagtctaccatgtaatgcgcacccttaactatttaaacatttaaccatggtccttaactatg |
24998161 |
T |
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| Q |
101 |
gtttaaggaccatggttaaattgtttttcttgagggagcagcattacatggtggactctcagtgagattgaaaacaagaaagaaacgggtagggagggag |
200 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24998162 |
gttcaaggaccatggttaaattgtttttctcgagggagcagcattacatggtggactctcagtgagattgaaaacagaaaagaaacgggtagggagggag |
24998261 |
T |
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| Q |
201 |
attagtgtggtagataagggtgcgttcactgcacatacatgaaccggcgagactcaagcatgagaacaaatgacgcttacacaatggaaattggcatcac |
300 |
Q |
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| T |
24998262 |
attagtgtggtagataagggtgcattcactacacatacatgaaccggcgagactcaagcatgaaaacaaatgacgctcacgcaatggaaattggcatcac |
24998361 |
T |
|
| Q |
301 |
cgttgccctaaataattctg------gnnnnnnnnncttatgaatta--ttttgtgttgaaattttattgatttattcaatccagttttcattatgatta |
392 |
Q |
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| T |
24998362 |
cgttgccctcgaaaattctgttttttttttctttttcttatgaattattttttgtgttgaaattttattgatttattcaatccagttttcattatgatta |
24998461 |
T |
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| Q |
393 |
atcgatttttgtcatgtct |
411 |
Q |
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| T |
24998462 |
atcaaattttgtcatgtct |
24998480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 448 - 528
Target Start/End: Original strand, 24998519 - 24998599
Alignment:
| Q |
448 |
caatgcaaatatggttagtgttataggttttacagtttaatgttctctgttagtatacaggggttatatacttttagtgat |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||| |
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| T |
24998519 |
caatgcaaatatggttagtgttataggttttacagtttaatgttctctgtcggtatccaggggctatatactcttagtgat |
24998599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 24998253 - 24998202
Alignment:
| Q |
6 |
ctacccgtttcttttctgttttcaatc-ccctgagagtctaccatgtaatgc |
56 |
Q |
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||||||||||||||||||||||||||| | ||||||||| |||||||||||| |
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| T |
24998253 |
ctacccgtttcttttctgttttcaatctcactgagagtccaccatgtaatgc |
24998202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 24998052 - 24998006
Alignment:
| Q |
199 |
agattagtgtggtagataagggtgcgttcactgcacatacatgaacc |
245 |
Q |
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||||||||||||| |||||||||||| |||||| ||||||||||||| |
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| T |
24998052 |
agattagtgtggtggataagggtgcgctcactgtacatacatgaacc |
24998006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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