View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_high_50 (Length: 260)
Name: NF3425_high_50
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_50 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8458310 - 8458070
Alignment:
| Q |
1 |
attatctacaaatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458310 |
attatctacaaatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacagct |
8458211 |
T |
|
| Q |
101 |
tcctacaaataatggtaacatgaaaaaatgaattcaatacctgatatacatgagactgcatgcgcatcaaagtttgtacaaagaaattaacttattgact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458210 |
tcctacaaataatggtaacatgaaaaaatgaattcaatacctgatatacatgaaactgcatgcgtatcaaagtttgtacaaagaaattaacttattgact |
8458111 |
T |
|
| Q |
201 |
agcaaaaaagggtaagatctaactgcaatgcttagttttca |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458110 |
agcaaaaaagggtaagatctaactgcaatgcttagttttca |
8458070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 25802572 - 25802704
Alignment:
| Q |
11 |
aatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
25802572 |
aatgtgactgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacagaattcctacaaa |
25802671 |
T |
|
| Q |
110 |
taatggtaacatgaaaaaatgaattcaatacct |
142 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
25802672 |
taatggtaacatgagaaaatgaattcaatacct |
25802704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 6827150 - 6827279
Alignment:
| Q |
19 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaataatggta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
6827150 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccagaattctatcttgacagaattcctacaaataatggta |
6827249 |
T |
|
| Q |
118 |
acatgaaaaaatgaattcaatacctgatat |
147 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
6827250 |
acatgagaaaatgaattcaatacctgatat |
6827279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 9822994 - 9822865
Alignment:
| Q |
19 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag-cttcctacaaataatggta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
9822994 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccataattctatcttgacagaattcctacaaataatggta |
9822895 |
T |
|
| Q |
118 |
acatgaaaaaatgaattcaatacctgatat |
147 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
9822894 |
acatgagaaaatgaattcaatacctgatat |
9822865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 18361145 - 18361263
Alignment:
| Q |
18 |
ctgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgaca-gcttcctacaaataatggt |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
18361145 |
ctgatcttgaaggccaccattcaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacatgattcctacaaataatggt |
18361244 |
T |
|
| Q |
117 |
aacatgaaaaaatgaattc |
135 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
18361245 |
aacatgagaaaatgaattc |
18361263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 27963964 - 27964043
Alignment:
| Q |
19 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctctcttgacag |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27963964 |
tgatcttgaaggccaccatccaatcacaccaggtggcttcccttgagcatcacgcagacgccaaaattctatcttgacag |
27964043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University