View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_61 (Length: 249)
Name: NF3425_high_61
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 38122471 - 38122251
Alignment:
| Q |
2 |
aagatattattactgttgttattctatattacat-aaaaaatacatgtagttatgaaagtacgtactgtttagcaccatgttgtctcaagataatatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
38122471 |
aagatattattactgttgttattctatattacatgaaaaaatgcatttagttatgcaagcacgcactgtttggcagaatgttgtctcaagataatatcaa |
38122372 |
T |
|
| Q |
101 |
gaaccctaatggcttcttgataactctcagtttcatgcccctttaaagcattggaaatggcctcgagaggaattttcgaagcaaggctgatttcaacttt |
200 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |||||||| |||||||||| | ||||| | ||||||||||||| |
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| T |
38122371 |
gaaccctaatggcttcttgataattctcagcttcatgcccctttaaggcattggcaatggcctgcagaggaatttccttagcaaagttgatttcaacttt |
38122272 |
T |
|
| Q |
201 |
ataagtcttcgaacggtatga |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
38122271 |
ataagtcttcgaacggtatga |
38122251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 38113916 - 38113769
Alignment:
| Q |
62 |
cgtactgtttagcaccatgttgtctcaagataatatcaagaaccctaatggcttcttgataactctcagtttcatgcccctttaaagcattggaaatggc |
161 |
Q |
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|||||||||| ||| ||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||| ||||| |
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| T |
38113916 |
cgtactgtttggcagcatgttgcctcaagataatgtcaagaaccctaatcgcttcttgataattctcagtttcatgcccttttaaggcattggcgatggc |
38113817 |
T |
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| Q |
162 |
ctcgagaggaattttcgaagcaaggctgatttcaactttataagtctt |
209 |
Q |
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|| ||||| || || || |||| ||||||||||||||| || ||||| |
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| T |
38113816 |
ctgcagagggatctttgaggcaaagctgatttcaactttgtaggtctt |
38113769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 14914876 - 14914674
Alignment:
| Q |
1 |
aaagatattattactgttgttattctatattacataaaaaatacatgtagttatgaaagtacgtactgtttagcaccatgttgtctcaagataatatcaa |
100 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||| | |||| ||||| || | |||||| ||| ||||||| ||| ||||||||||||||||| |||||| |
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| T |
14914876 |
aaagatattattaatgttgttgttcgatattaagttaaaattacatatattaatgaaaacacgcactgtttggcagcatgttgtctcaagatagtatcaa |
14914777 |
T |
|
| Q |
101 |
gaaccctaatggcttcttgataactctcagtttcatgcccctttaaagcattggaaatggcctcgagaggaattttcgaagcaaggctgatttcaacttt |
200 |
Q |
| |
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||||||| | ||||||||||||| |||| ||||| || ||||| || || || |||||||| ||||||||||| || ||| | ||||||||||||| |
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|
| T |
14914776 |
gaacccttagggcttcttgataattctcggtttcttgacccttaaaggctctgtcaatggcctgcagaggaatttttgatgcatagttgatttcaacttt |
14914677 |
T |
|
| Q |
201 |
ata |
203 |
Q |
| |
|
||| |
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|
| T |
14914676 |
ata |
14914674 |
T |
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