View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_63 (Length: 248)
Name: NF3425_high_63
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 41560579 - 41560398
Alignment:
| Q |
18 |
agaaaccccattcagaacatgctttggcgagttcatgaacagcctttgtgtggatttcgaggtcatctgaagttaggagagagaaatcaatgactgagat |
117 |
Q |
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| T |
41560579 |
agaaaccccattcagaacatgctttggcgatttcatgaacagcctttgtgtggattttgaggtcatctgaggttaggagagagaaatcaatgactgggat |
41560480 |
T |
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| Q |
118 |
ggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgtgagggagtggtaacttgaaggaataggaaaggct |
199 |
Q |
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| T |
41560479 |
ggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgcgagggagtggtaacttgaaggaataggaaaggct |
41560398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 41555927 - 41555703
Alignment:
| Q |
18 |
agaaaccccattcagaacatgctttggcgagttcatgaacagcctttgtgtggatttcgaggtcatctgaagttaggagagagaaatcaatgactgagat |
117 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||| || ||| |
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| T |
41555927 |
agaaaccccattcagaacatgccttggctagttcatgaacagcttttgtgtggatttgagggtcatctgaagtgagcagagagaaatcaatgattgggat |
41555828 |
T |
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| Q |
118 |
ggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgtgagggagtggtaacttgaaggaataggaaaggctccgtttgattgtgcaaag |
217 |
Q |
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||||||||||| ||| |||| |||||||| ||||||| || |||||||||||||||||||| | |||||||| || ||| ||| ||||||| |||||| |
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| T |
41555827 |
ggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatgagagaggttccatttgattccgcaaag |
41555728 |
T |
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| Q |
218 |
gatttgatacttgaaatatttgatg |
242 |
Q |
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| T |
41555727 |
gctttgatgcttgaaatatttgatg |
41555703 |
T |
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