View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_66 (Length: 247)
Name: NF3425_high_66
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_66 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 24718895 - 24719053
Alignment:
| Q |
19 |
ctcctagatattgatttgccatttaatttcttagctgtagaactgttacatcatggcttgcggtttgctgaactctgcatataatacatgtattaactac |
118 |
Q |
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| T |
24718895 |
ctcctagatattgatttgccatttaatttcttagctgtagaactgttacatcatggcttgcggtttgctgaactctgcatataatacatgtattaactac |
24718994 |
T |
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| Q |
119 |
cattttttgaaatagttgcaatgaattgtaaattcttcatgctcctcaagtacaatgac |
177 |
Q |
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| T |
24718995 |
cattttttgaaatagttgcaatgaattgtaaattcttcatgctcctcaagtacaatgac |
24719053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 24675497 - 24675594
Alignment:
| Q |
80 |
ggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattcttcatgctcctcaagtacaatgac |
177 |
Q |
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| T |
24675497 |
ggtttgctgaactctgcaaataatacacgtattaactaccatttttcgaaacagtttcaatgaattgtaagttcttcacgctcctcaagtacaatgac |
24675594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 24640398 - 24640495
Alignment:
| Q |
80 |
ggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattcttcatgctcctcaagtacaatgac |
177 |
Q |
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| T |
24640398 |
ggtttgctgaactctgcaaataatacatgtattaactaccatttttcgaaacagttggaattaattgtaaattcttcacgctccttaagtacagtgac |
24640495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 24691599 - 24691696
Alignment:
| Q |
80 |
ggtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattcttcatgctcctcaagtacaatgac |
177 |
Q |
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| T |
24691599 |
ggtttgccgaactctgcaaataatacaagtattaactaccatatttcgaaacagttgcaatgaattgtaagttcttcatgctccttaagtacaatgac |
24691696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 24652381 - 24652455
Alignment:
| Q |
82 |
tttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattcttc |
156 |
Q |
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| T |
24652381 |
tttgctgaactctgcaaataatacatgtattaactacaattttacgaaacagttgcaatgaatcgtacattcttc |
24652455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 24632645 - 24632727
Alignment:
| Q |
80 |
ggtttgctgaactctgcatataatacatgtatt-aactaccattttttgaaatagttgcaatgaattgtaaattcttcatgct |
161 |
Q |
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| T |
24632645 |
ggtttgctgaactctgcaaataatacatgtgttaaactaccatttttcgaaacccttgcaatctaatgtaaattcttcatgct |
24632727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 24713782 - 24713863
Alignment:
| Q |
81 |
gtttgctgaactctgcatataatacatgtattaactaccattttttgaaatagttgcaatgaattgtaaattcttcatgctc |
162 |
Q |
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| T |
24713782 |
gtttgctgaactctgcatattatacaagtatcaactaccatttttcgaaacccttgcactaaaatgtaaattcttcctgctc |
24713863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 24717090 - 24717147
Alignment:
| Q |
74 |
gcttgcggtttgctgaactctgcatataatacatgtat-taactaccattttttgaaa |
130 |
Q |
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| T |
24717090 |
gcttgaggtttgctgaactctgcaaataatacatgtatcaaactaccatttttcgaaa |
24717147 |
T |
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