View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_high_69 (Length: 246)
Name: NF3425_high_69
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_69 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14213575 - 14213810
Alignment:
| Q |
1 |
accattaaattataacaataaattaaaggtaataaccaaatttgtttatcagcctcctaccttcacttcaat-ccccatggattaaaatctaaagtctca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
14213575 |
accattaaattataacaataaattaaaggtaataaccatatttgtttatcagcctcctaccttcacttcaatcccccatggattaaaatctaaactctca |
14213674 |
T |
|
| Q |
100 |
cgaactcatttcatattttcttccactctattttaaacccagaga--nnnnnnncaaataagagtaaatacaaaggacttatatcccttagaatgagttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213675 |
cgaactcatttcatattttcttccactctatttcaaacccagagatttttttttcaaataagagtaaatacaaaggacttatatcccttagaatgagttt |
14213774 |
T |
|
| Q |
198 |
aagaatataggttaaacgactaggtcatgttgaatt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
14213775 |
aagaatataggttaaacgactaggtcatgttgaatt |
14213810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University