View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_7 (Length: 503)
Name: NF3425_high_7
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 10048474 - 10048110
Alignment:
| Q |
18 |
gaatcaatgtggaagccctaatcacaagatatatat--gtttaccatttttaatttgacttgtgtaattctctttacacctagcagacaaattgcccttt |
115 |
Q |
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| T |
10048474 |
gaatcaatgtggaagccctaatcacaagatatatatatgtttaccatttttaatttgacttgtgtaattctctttacacctagcagacaaattgcccttt |
10048375 |
T |
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| Q |
116 |
tggtacaaatattctactcaacgctatttgatgatcatggtgatttgtgcaaataagtttcatttatagcacaaccgcatacattacatgttaactgatg |
215 |
Q |
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| T |
10048374 |
tggtacaaatattctactcaacactatttgatgatcatggtgatttgtgaaaataagttccatttatagcacaaccacatacattacatattaactgatg |
10048275 |
T |
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| Q |
216 |
aattcaagagtagatttacttattgacacattatgcctcaaaaaacagttctgaatcttaacttgcaatgacttttgaaattgcattcatactgatacta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
10048274 |
aattcaagagtagatttacttattgacacattatgccttaaaaaacagttctgaatcttaacttgcaatgacttttgaaattgcattcatactcatacca |
10048175 |
T |
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| Q |
316 |
agaaatcatttaatttggtcgagagaagtagttgtataagatgtttagtggtcagtgtaattaac |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10048174 |
agaaatcatttaatttggtcgagagaagtagttgtataagatgtttagtggtcagagtaattaac |
10048110 |
T |
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