View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_71 (Length: 244)
Name: NF3425_high_71
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40078497 - 40078718
Alignment:
| Q |
1 |
tttaggctagtaggctagctactagaaatcagtaaaagaataaaacgagtgaaaaagtagaaaattgcgatttcgctttcaatgaacctttgttattatg |
100 |
Q |
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| T |
40078497 |
tttaggctagtaggctagctactagaaatcagtaaaagaataaaacgagtgaaaa-gtagaaaattgcgatttcgctttcaatgaacctttgttattatg |
40078595 |
T |
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| Q |
101 |
tattcatctactatgtacctacctattgctggtggctgtatcatatatgttatagcttaaaacgcttgattgcggannnnnnnnncctgttctaatagtt |
200 |
Q |
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| T |
40078596 |
tattcatctactatg----tacctattgctggtggctgtatcatatatgttatagcttaaaacgcttgattgtggatttttttttcctgttctaatagtt |
40078691 |
T |
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| Q |
201 |
gatctcagacaccaataaaacaaaata |
227 |
Q |
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| T |
40078692 |
gatctcagacaccaataaaacaaaata |
40078718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 40073207 - 40073284
Alignment:
| Q |
16 |
tagctactagaaatcagtaaaagaataaaacgagtgaaaaagtagaaaattgcgatttcgctttcaatgaacctttgtt |
94 |
Q |
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||||||||||| |||||||||||||||||| ||||| |||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
40073207 |
tagctactagatatcagtaaaagaataaaaggagtg-aaaagtagaagattgcggtttcgctttcagtgaacctttgtt |
40073284 |
T |
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