View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_75 (Length: 237)
Name: NF3425_high_75
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_75 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 5494 - 5713
Alignment:
| Q |
18 |
gaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatatgtttgaatggtactgactcaacaaaggaagcatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5494 |
gaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatatgtttgaatggtactgactcaacaaaggaagcatg |
5593 |
T |
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| Q |
118 |
atcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacacttcagaataaagatgtgtccggtatccgatgtgt |
217 |
Q |
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| T |
5594 |
atcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacacttcagaataaagatgtgtccggtatccgatgtgt |
5693 |
T |
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| Q |
218 |
gaatgtcgtgttcggtgttt |
237 |
Q |
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|||||||||||||||||||| |
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| T |
5694 |
gaatgtcgtgttcggtgttt |
5713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 5494 - 5713
Alignment:
| Q |
18 |
gaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatatgtttgaatggtactgactcaacaaaggaagcatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5494 |
gaatccatgtcactccaaaacaaaccaagaaatacacacattggaagagtgtaaacaatactatatgtttgaatggtactgactcaacaaaggaagcatg |
5593 |
T |
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| Q |
118 |
atcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacacttcagaataaagatgtgtccggtatccgatgtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5594 |
atcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacacttcagaataaagatgtgtccggtatccgatgtgt |
5693 |
T |
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| Q |
218 |
gaatgtcgtgttcggtgttt |
237 |
Q |
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|||||||||||||||||||| |
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| T |
5694 |
gaatgtcgtgttcggtgttt |
5713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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