View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_high_77 (Length: 236)
Name: NF3425_high_77
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_77 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 43162160 - 43162264
Alignment:
| Q |
1 |
attcaccacatttaaaaaatttcctgcaaaaaattgtcgttgacaattatcaaatcaatacacatccagtaataaaatgaggcaaagaaaagtacaaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43162160 |
attcaccacatttaaaaaatttcctgcaaaaaattgtcgttgacaattatcaaatcaatacacatccagtaataaaatgaggcaaagaaaagtacaaaga |
43162259 |
T |
|
| Q |
101 |
cattt |
105 |
Q |
| |
|
||||| |
|
|
| T |
43162260 |
cattt |
43162264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University