View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_high_84 (Length: 219)
Name: NF3425_high_84
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_high_84 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17594198 - 17593980
Alignment:
| Q |
1 |
gggtcttaggatccagaatgttacacgattagccactgcaaccgctaatatttgtttgacaagttctttaaggtaatattctaagacattttcagaattc |
100 |
Q |
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| T |
17594198 |
gggtcttaggatccagaatgttacacgattagccactgcaaccgctaatatttgtttgacaagttctttaaggtaatattctaagacattttcagaattc |
17594099 |
T |
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| Q |
101 |
catattggaccaggattatctatacggttcacaaaacaagcaatttctcccttcggcatattaagctcgcctttcataaattttgtcatatcatgttcat |
200 |
Q |
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| T |
17594098 |
catattggaccaggattatctatacggttcacaaaacaagcaatttcttccttcggcgtattaagctggcctttcataaattttgctatatcattttcat |
17593999 |
T |
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| Q |
201 |
gttccataatgacttattc |
219 |
Q |
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| T |
17593998 |
gttccataatgacttattc |
17593980 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 42111715 - 42111757
Alignment:
| Q |
177 |
taaattttgtcatatcatgttcatgttccataatgacttattc |
219 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||| |
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| T |
42111715 |
taaattttattatatcatgttcatgttccataatgacttattc |
42111757 |
T |
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