View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_low_1 (Length: 792)

Name: NF3425_low_1
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_low_1
NF3425_low_1
[»] chr6 (2 HSPs)
chr6 (1-774)||(34865436-34866209)
chr6 (535-644)||(7948181-7948291)
[»] chr4 (2 HSPs)
chr4 (43-258)||(51857864-51858077)
chr4 (430-510)||(51857703-51857783)


Alignment Details
Target: chr6 (Bit Score: 717; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 1 - 774
Target Start/End: Original strand, 34865436 - 34866209
Alignment:
Q  1 agacactacggaatcgaagaacatcaaatggattcaaattcatggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34865436 agacactacggaatcgaagaacatcaaatggattcaaattcttggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatc 34865535  T
Q  101 atccatcatcacacactttttcttcaagtctccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatatataagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34865536 atccatcatcacacactttttcttcaagtctccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatatataagg 34865635  T
Q  201 aatccgtgagatatttttgcgtaacattgaatacaccatgaaaatcatacgatttcaatagcctgcaccaaaatgaaaattatttaaaaaattaaatgat 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34865636 aatccatgagatatttttgcgtaacattgaatacaccatgaaaatcatatgatttcaatagcctgcaccaaaatgaaaattatttaaaaaattaaatgat 34865735  T
Q  301 ttctatcatcttcatcatatgcgttgaatacaataaaaactgatatggaatgtaaatatactgctatcgatgcaaataaggaggtaaacaaacatatcaa 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34865736 ttctatcatcttcatcatatacgttgaatacaataaaaactgatatggaatgtaaatatactgctatcgatgcaaataaggaggtaaacaaacatatcaa 34865835  T
Q  401 caaatatcccaaatttttattcnnnnnnnggaggagcatcaaatatttacttactctttaatcaccttctgaacttgacgaatcattatttgaaggagcc 500  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  34865836 caaatatcccaaatttttattcaaaaaaaggaggagcatcaaatatttacttactctttaatcaccttcagaacttgacgaatcgttatttgaaggagcc 34865935  T
Q  501 tccaaagatttctttatcagaaagattgtctgtctggaggccaagtagctccccttttctgcacactctgatatggacttctgacttgttaatgcaatgt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34865936 tccaaagatttctttatcagaaagattgtctgtctggaggccaagtagctccccttttctgcacactctgatatggacttctgacttgttaatgcaatgt 34866035  T
Q  601 ctttgagttggttaatgagcacctgcatataaaaacgcaacaatttgaaattcctatattggaatctttcgagtgtatgaaccgctactaatggtcaact 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34866036 ctttgagttggttaatgagcacctgcatataaaaacgcaacaatttgaaattcctatattggaatctttcgagtgtatgacccgctactaatggtcaact 34866135  T
Q  701 ctgtataagatactaaacccctactgtgaatagaggaaagacacattcaactatatatcaatatttatctgtag 774  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34866136 ctgtatacgatactaaacccctactgtgaatagaggaaagacacgttcaactatatatcaatatttatctgtag 34866209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 644
Target Start/End: Original strand, 7948181 - 7948291
Alignment:
Q  535 tggaggccaagtagctccccttttctgcacactctgatatggacttctgacttgttaatgcaatgtctttgagttggttaatgagcacctgcatat-aaa 633  Q
    ||||||||||| || || | ||||||| |||||||||||||||||||||| |||||   |||| ||||||||||||||| || |||||||||| || |||    
T  7948181 tggaggccaagcagttcactttttctgtacactctgatatggacttctgaattgttggggcaacgtctttgagttggttgataagcacctgcaaatgaaa 7948280  T
Q  634 aacgcaacaat 644  Q
    || ||||||||    
T  7948281 aaggcaacaat 7948291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 43 - 258
Target Start/End: Complemental strand, 51858077 - 51857864
Alignment:
Q  43 tggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccgtcaccagt 142  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||| ||||||||||||  |||||||||||||||| || | ||    
T  51858077 tggatataataactaaccataagtctcgaggaagatttagccaatcaaccgtgtcatcatctatcatcacacacactttcttcaagtctccg-catctgt 51857979  T
Q  143 ccctgctgccactctgcccgttcttttc--ttttataataatttatatttatatataaggaatccgtgagata-tttttgcgtaacattgaatacaccat 239  Q
     |||||||| ||||||||| ||||||||  |||| | ||||||||||||    ||| | ||||||  |||||| ||||||| ||||||||||||||||||    
T  51857978 tcctgctgctactctgcccattcttttcttttttttgataatttatatt----tatgaagaatccacgagatattttttgcataacattgaatacaccat 51857883  T
Q  240 gaaaatcatacgatttcaa 258  Q
    |||||||||||||||||||    
T  51857882 gaaaatcatacgatttcaa 51857864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 430 - 510
Target Start/End: Complemental strand, 51857783 - 51857703
Alignment:
Q  430 ggaggagcatcaaatatttacttactctttaatcaccttctgaacttgacgaatcattatttgaaggagcctccaaagatt 510  Q
    ||||| |||||| || |||||| |||||||||||||||| ||||||||||   || |||||||||||||||||||||||||    
T  51857783 ggaggggcatcagatgtttactcactctttaatcaccttgtgaacttgacacttcgttatttgaaggagcctccaaagatt 51857703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University