View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_10 (Length: 469)
Name: NF3425_low_10
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 42309145 - 42309552
Alignment:
| Q |
19 |
gttctgataccacatatatttttcaggttgtgattttcatagcaatggaaagattgaacacagagttgtactaccaaaactgtcacataatgaaagagaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309145 |
gttctgataccacatatatttttcaggttgtgattttcgtagcaatggaaagattgaacacagagttgtactaccaaaactgtcacataatgaaagagaa |
42309244 |
T |
|
| Q |
119 |
tgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgtctcagcttaaacaaaagctctcaaatggtgctggtaactcaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309245 |
tgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgtctcagcttaaacaaaagctctcaaatggtgctggtaactcaaaa |
42309344 |
T |
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| Q |
219 |
accaatgcaccaaacaacatgcttgaccttaaccttggatcaggttcaagtcaaaatgcttcaaattccagcaattagagataagaagtatcatcatcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42309345 |
accaatgcaccaaacaacatgcttgaccttaaccttggatcaggttcaagtcaaaatgcttccaattccagcaattagagataagaagtatcatcatcaa |
42309444 |
T |
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| Q |
319 |
catcatgtcatgacccaactaggagactttttattttgtgaaaaagccaaagttttcaatgtagtggtttcagggtactaatatttccatttaccttctt |
418 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309445 |
ca-----tcatgacccaactaggagactttttattttgtgaaaaaaccaaagtgttcaatgtagtggtttcagggtactaatatttccatttaccttctt |
42309539 |
T |
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| Q |
419 |
ttatctattttag |
431 |
Q |
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||||||||||||| |
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| T |
42309540 |
ttatctattttag |
42309552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 244
Target Start/End: Complemental strand, 10284509 - 10284371
Alignment:
| Q |
106 |
taatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgtctcagcttaaacaaaagctctcaaatggtgc |
205 |
Q |
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|||||||||| ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
10284509 |
taatgaaagataatgaaaagctaaggaagaaatatgagattctgaacaaagagaatcaagcacttgcatctcagctcaaacaaaaattctcaaatggtgc |
10284410 |
T |
|
| Q |
206 |
tggtaactcaaaaaccaatgcaccaaacaacatgcttga |
244 |
Q |
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| T |
10284409 |
tagtaactccaaaaccaatgctccaaacaacatgcttga |
10284371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 42312432 - 42312561
Alignment:
| Q |
80 |
agagttgtactaccaaaactgtcacataatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgtctcag |
179 |
Q |
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||||||||||||| |||| ||||||||||| ||||||||||||| | | |||| ||||| |||| || ||||||||| |||||||| |||||||||| |
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| T |
42312432 |
agagttgtactacaaaaattgtcacataataaaagagaatgaaatgttaaggaggaaaggtcaacttttgaatcaag---atcaagcatttttgtctcaa |
42312528 |
T |
|
| Q |
180 |
cttaaacaaaagctctcaaatggtgctggtaac |
212 |
Q |
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|| ||||| | | |||||| ||||||| ||||| |
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| T |
42312529 |
ctcaaacagatgttctcaattggtgctagtaac |
42312561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 10284352 - 10284286
Alignment:
| Q |
251 |
ccttggatcaggttcaagtcaaaatgcttcaaattccagcaattagagataagaagtatcatcatca |
317 |
Q |
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|||||| |||||||||||||||||| ||||||||| || |||||| | ||| || | |||||||||| |
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| T |
10284352 |
ccttggttcaggttcaagtcaaaatccttcaaatttcaacaattacatatatgaggcatcatcatca |
10284286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 17171662 - 17171470
Alignment:
| Q |
63 |
atggaaagattgaacacagagttgtactaccaaaactgtcacataatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatc |
162 |
Q |
| |
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||||||| || ||||| |||||||||| | |||| |||| | |||||||||||||||||| | | |||| ||||||| || |||| | | ||||||| | |
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| T |
17171662 |
atggaaaaatcgaacagagagttgtacaagaaaaattgtcgcttaatgaaagagaatgaaaagttgaggaggaaagctgaatttctaagtgaagagaaac |
17171563 |
T |
|
| Q |
163 |
aagcacttttgtctcagcttaaacaaaagctctcaaatggtgctggtaactcaaaaaccaatgcaccaaacaacatgcttgaccttaaccttg |
255 |
Q |
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|| ||||||| | |||||| ||||||||| |||||||||||||| ||||||| ||||||||||| | || |||||||||||| |||||||||| |
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| T |
17171562 |
aaacacttttatatcagctcaaacaaaagttctcaaatggtgctagtaactccaaaaccaatgctcgaagcaacatgcttgatcttaaccttg |
17171470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 63 - 255
Target Start/End: Complemental strand, 17176470 - 17176278
Alignment:
| Q |
63 |
atggaaagattgaacacagagttgtactaccaaaactgtcacataatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatc |
162 |
Q |
| |
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||||||| || ||||| |||||||||| | ||||||||| | |||||||||||||||||| | | |||| ||||||| || |||| | ||||||| | |
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| T |
17176470 |
atggaaaaatcgaacagagagttgtacaagaaaaactgtcgcttaatgaaagagaatgaaaagttgaggaggaaagctgaacttctacgtgaagagaaac |
17176371 |
T |
|
| Q |
163 |
aagcacttttgtctcagcttaaacaaaagctctcaaatggtgctggtaactcaaaaaccaatgcaccaaacaacatgcttgaccttaaccttg |
255 |
Q |
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|| ||||||| | |||||| ||||||||| |||||| ||||||| ||||||| ||||||||||| | || |||||||||||| |||||||||| |
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| T |
17176370 |
aaacacttttatatcagctcaaacaaaagttctcaattggtgctagtaactccaaaaccaatgctcgaagcaacatgcttgatcttaaccttg |
17176278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 75 - 256
Target Start/End: Complemental strand, 17166867 - 17166686
Alignment:
| Q |
75 |
aacacagagttgtactaccaaaactgtcacataatgaaagagaatgaaaggcttaggaagaaagctcaaattctgaatcaagagaatcaagcacttttgt |
174 |
Q |
| |
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|||| |||||||||| | |||| |||| | |||||||||| ||||||| | | |||||||||| | || |||| | | ||||||| ||| ||||||| | |
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| T |
17166867 |
aacagagagttgtacaagaaaaattgtcgcttaatgaaagaaaatgaaaagttgaggaagaaagttgaacttctaagtgaagagaaacaaacacttttat |
17166768 |
T |
|
| Q |
175 |
ctcagcttaaacaaaagctctcaaatggtgctggtaactcaaaaaccaatgcaccaaacaacatgcttgaccttaaccttgg |
256 |
Q |
| |
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||||||| |||||| || |||||||||||||| ||||||| |||||| |||| |||||||||||| |||| ||||||||||| |
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| T |
17166767 |
ctcagctcaaacaacagatctcaaatggtgctagtaactccaaaaccgatgctccaaacaacatgattgatcttaaccttgg |
17166686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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