View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_11 (Length: 453)
Name: NF3425_low_11
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_11 |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Original strand, 40957737 - 40958176
Alignment:
| Q |
14 |
cagagagggtgctatttcttcctctttcatgaaacatagagttttatgcttttcaattttctgattccggagatgtttttctgtcaggacattacacaat |
113 |
Q |
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| T |
40957737 |
cagagagggtgctatttcttcctctttcatgaaacatagagttttatgcttttcaattttctgattccggagatgtttttctgtcaggacattacacaat |
40957836 |
T |
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| Q |
114 |
ccccgaatgacaccttaatgatcacagggcagtggttttaccgtccatatgaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagaga |
213 |
Q |
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| T |
40957837 |
cccccaatgacaccttaatgatcacaggtcagtggttttaccgtccatatgaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagaga |
40957936 |
T |
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| Q |
214 |
gttatattatagtttccaccaagacgctgttcctgcagaatctgttaagcatacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgt |
313 |
Q |
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| T |
40957937 |
gttatattatagtttccaccaagacgctgttcctgcagaatctgttaagcatacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgt |
40958036 |
T |
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| Q |
314 |
aagcagcatcccgggtttgtggtgcagaaggtttatgacatagaaacaatgaaattgtggaatctaactgataaggactacaaggacgataaacaaaaag |
413 |
Q |
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| T |
40958037 |
aagcagcatcccgggtttgtggtgcagaaggtgtatgacatagaaacaatgaaattgtggaatctaactgataaggactacaaggacgataaacaaaaag |
40958136 |
T |
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| Q |
414 |
aaattgatgagcttgttcagaaaaccattcaacgtttggg |
453 |
Q |
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| T |
40958137 |
aaattgatgagcttgttctgaaaaccattcaacgtttggg |
40958176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 131 - 438
Target Start/End: Original strand, 40944861 - 40945168
Alignment:
| Q |
131 |
atgatcacagggcagtggttttaccgtccatatgaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttcc |
230 |
Q |
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| T |
40944861 |
atgatcacagggcagtggttctaccgtccagatgaagcagaaaaaaagggaggtggtagctggcaatccgttgacaccagagagctgttttatagtttcc |
40944960 |
T |
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| Q |
231 |
accaagacgctgttcctgcagaatctgttaagcatacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgtaagcagcatcccgggtt |
330 |
Q |
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| T |
40944961 |
accgagatgaggttcctgcagaatctgttatgcataagtgtgtggtgcattttgtccccatacacaaacagcttccaaatcgtaaggtacatcccgggtt |
40945060 |
T |
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| Q |
331 |
tgtggtgcagaaggtttatgacatagaaacaatgaaattgtggaatctaactgataaggactacaaggacgataaacaaaaagaaattgatgagcttgtt |
430 |
Q |
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| T |
40945061 |
catagtgcagaaggtgtatgacacagatgaattgaaactgtggaaattaactgataaggactatcaagacaataatcaacaagaaattgatgagcttgtt |
40945160 |
T |
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| Q |
431 |
cagaaaac |
438 |
Q |
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|||||||| |
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| T |
40945161 |
cagaaaac |
40945168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 453
Target Start/End: Complemental strand, 22508414 - 22508024
Alignment:
| Q |
64 |
tttcaattttctgatt-ccggagatgtttttctgtcaggacattacacaatccccgaatgacaccttaatgatcacagggcagtggttttaccgtccata |
162 |
Q |
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|||| ||||||||||| |||| ||||||||||||||||||||| |||||||| || | | ||| | ||||||| ||| |||||||||||| | |
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| T |
22508414 |
tttcgattttctgattgccggctatgtttttctgtcaggacattgaacaatccctaaaagggaacttgaagatcacaacgcatcttttttaccgtccaga |
22508315 |
T |
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| Q |
163 |
tgaagcagagaaaaaaggaggtggtacctggcaatcaaatgagacgagagagttatattatagtttccaccaagacgctgttcctgcagaatctgttaag |
262 |
Q |
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| T |
22508314 |
tgaagcagaaagaaggagaggtcatacctggaaatcgaagatcaagagagagttattttatagtttccaccaatatgttgttccggcagaaaatgttatg |
22508215 |
T |
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| Q |
263 |
catacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgtaagcagcatcccgggtttgtggtgcagaaggtttatgacatagaaacaa |
362 |
Q |
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||||| |||| ||| ||||| |||| |||||||| ||||||||| ||||| || ||| ||||| | ||||| ||||| ||| ||| | || || |
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| T |
22508214 |
catacatgtgcggttcatttcattccggtacacaaaaaacttccaacaagtaaggaggttcctgggttcattgtgcaaaaggtgtataacacaaaagaaa |
22508115 |
T |
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| Q |
363 |
tgaaattgtggaatctaactgataaggactacaaggacgataaacaaaaagaaattgatgagcttgttcagaaaaccattcaacgtttggg |
453 |
Q |
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| T |
22508114 |
agaaattaaggaatttaactgataaggtctacgacgacaatcagcaacaagaaatggataaccttgttcagaaaactattcaacgtttggg |
22508024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 2665409 - 2665327
Alignment:
| Q |
242 |
gttcctgcagaatctgttaagcatacgtgtgtggtgcattttgttcccatacacaaacaacttccaaatcgtaagcagcatcc |
324 |
Q |
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| T |
2665409 |
gttcctgcagagtctgttatgcataagtgcgtggtgcattttgtgcccttgaacaaacagtttccgaaacgtaagcaacatcc |
2665327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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