View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_15 (Length: 436)
Name: NF3425_low_15
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 5 - 421
Target Start/End: Complemental strand, 46747658 - 46747242
Alignment:
| Q |
5 |
tgtcgaagaatatgagaaatttaactgagcttatcttcttttgcaatagaatttttgcagtgagcaattgcagcttgaatagctgcttgtaactcttcca |
104 |
Q |
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| T |
46747658 |
tgtctaagagtatgagaaatttaactgagcttatcttcttttgcaatagaatttttgcagtgagcaattgcagcttgaatagctgcttgtaactcttcca |
46747559 |
T |
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| Q |
105 |
tggaactattattagaagaagatgaagaaagagaaccacctgttgcaagcaataagccactatttgttggagaagctctcattgaagctggtgctgaata |
204 |
Q |
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| T |
46747558 |
tggaactattattagaagaagatgaagaaagagaaccacctgttgcaagcaataagccactatttgttggagaagctctcattgaagctggtgctgaata |
46747459 |
T |
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| Q |
205 |
ttctcctctactacctctcacttctggcttatttttccttattaaattccctgaacgtgaataagcttctccatggaatccattcttttctcttctccct |
304 |
Q |
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| T |
46747458 |
ttctcctctactacctctcacttctggcttatttttccttattaaattccctgaacgtgaataagcttctccatggaatccattcttttctcttctccct |
46747359 |
T |
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| Q |
305 |
ctaaaaagttgcacattttttaagtattttttcaatgcttgaatcatatcatacccaacaagtttcttcttgttatgcttctctttattgttatgatttc |
404 |
Q |
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| T |
46747358 |
ctaaaaagttgcacattttttaagtattttttcaatgcttgaatcatatcatacccaacaagtttcttcttgttatgcttctctttattgttatgatttc |
46747259 |
T |
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| Q |
405 |
cttttgatgatccaaac |
421 |
Q |
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| T |
46747258 |
cttttgatgatccaaac |
46747242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 5998711 - 5998763
Alignment:
| Q |
53 |
gaatttttgcagtgagcaattgcagcttgaatagctgcttgtaactcttccat |
105 |
Q |
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| T |
5998711 |
gaatttttgcaatgagcaattgcagattgaatagcagcttgtaactcttccat |
5998763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 5998810 - 5998853
Alignment:
| Q |
161 |
ccactatttgttggagaagctctcattgaagctggtgctgaata |
204 |
Q |
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| T |
5998810 |
ccactatttgttggagaagttctcattgatgctggtgctgaata |
5998853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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