View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_16 (Length: 432)
Name: NF3425_low_16
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 33446354 - 33445946
Alignment:
| Q |
11 |
caaaggaaattgtcgacgttcaaatgtaatagacacattggcaccagacgggataagattcattcgaggtatgtaagcaacttccccgtcatgcaaacca |
110 |
Q |
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| T |
33446354 |
caaaggaaattgtcgacgttcaaatgtaatagacacattggcaccagatggtatgagattcatccgaggtatgtaggcaacttcgccatcatgcaaacca |
33446255 |
T |
|
| Q |
111 |
ccaataatacgcgcacatatgacatttttgcctaa-gaaatgacagttaaacgcgtaccattgcaaagaccagctgattgatcaacgttgcgaagcaaca |
209 |
Q |
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| T |
33446254 |
ccaataatacgcgcacatatgacatttttgcccaatgaaatgacagttaaacgggtaccattgcacagaccagccgattgatcaacgttgcgaagcaaca |
33446155 |
T |
|
| Q |
210 |
taacaggagcaccaacctttaagatcaatctatgatttggcataccagagcattttatttcattcaggaactccgatgtcatccatcggtgatcaacccc |
309 |
Q |
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| T |
33446154 |
taacaggaacaccaaccttcaagatcaatctatgatttggcataccagagcatttgatatcgttcaagaactccgtagtgatccaacggtgatcaacccc |
33446055 |
T |
|
| Q |
310 |
tatgtcatcatcgcatttacaaacagaatcacagctcaaatattccttctcttctccaggacccatagtcatgatgtagtcattaaccttctcgaccaac |
409 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||| |
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| T |
33446054 |
tatgtcatcatcacacttacaaacagaatcacagctcaaatattccttctcatctccaggaagcatgaccatgatgtagtcgttaaccttctcgaccaac |
33445955 |
T |
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| Q |
410 |
tcaagagtg |
418 |
Q |
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| T |
33445954 |
tcaagagtg |
33445946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 417
Target Start/End: Complemental strand, 46471558 - 46471170
Alignment:
| Q |
30 |
tcaaatgtaatagacacattggcaccagacgggataagattcattcgaggtatgtaagcaacttccccgtcatgcaaaccaccaataatacgcgcacata |
129 |
Q |
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| T |
46471558 |
tcaaaagtaatggaaacattagcaccagaaggaatcagattcatccgaggaatgtaggaaacctcaccagcatgtgtaccaccaataacacgtgcacaaa |
46471459 |
T |
|
| Q |
130 |
tgacatttttgcctaagaa-atgacagttaaacgcgtaccattgcaaagaccagctgattgatcaacgttgcgaagcaacataacaggagcaccaacctt |
228 |
Q |
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| T |
46471458 |
tcacatttttccccaaggagacaataatcaaacgtgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacaggaactccaacctt |
46471359 |
T |
|
| Q |
229 |
taagatcaatctatgatttggcataccagagcattttatttcattcaggaactccgatgtcatccatcggtgatcaacccctatgtcatcatcgcattta |
328 |
Q |
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| T |
46471358 |
caaacataacctatggtttggcattcccgaacacttgatgtcattcaagaaatcagttgtaatccatcgatgatcaacacctatatcatcgtcgcatttg |
46471259 |
T |
|
| Q |
329 |
caaacagaatcacagctcaaatattccttctcttctccaggacccatagtcatgatgtagtcattaaccttctcgaccaactcaagagt |
417 |
Q |
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| T |
46471258 |
caaaccgaatcacaactcaaatattccttttcatctccaggtatcattgccatcacataatcattaaccttttcaaccaactcaagagt |
46471170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 3856526 - 3856327
Alignment:
| Q |
30 |
tcaaatgtaatagacacattggcaccagacgggataagattcattcgaggtatgtaagcaacttccccgtcatgcaaaccaccaataatacgcgcacata |
129 |
Q |
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||||| ||||| || ||||| |||||||| ||||| |||||||| ||||| ||||| |||| || || |||| ||||||||||| ||| ||||| | |
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| T |
3856526 |
tcaaacgtaatggaaacattagcaccagaagggatcagattcatccgaggaatgtagacaacctcaccagcatgtgcaccaccaataacacgtgcacaaa |
3856427 |
T |
|
| Q |
130 |
tgacatttttgcctaa-gaaatgacagttaaacgcgtaccattgcaaagaccagctgattgatcaacgttgcgaagcaacataacaggagcaccaacctt |
228 |
Q |
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| T |
3856426 |
tcacatttttccccaaagagacaataatcaaacgcgttccattgcagagaccagatgcttgatcaacgttgcgaagcaacatgacatgaactccaacctt |
3856327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 340
Target Start/End: Complemental strand, 18046376 - 18046223
Alignment:
| Q |
187 |
ttgatcaacgttgcgaagcaacataacaggagcaccaacctttaagatcaatctatgatttggcataccagagcattttatttcattcaggaactccgat |
286 |
Q |
| |
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||||||||| || ||||||||||||| |||| |||||||||| | || | ||||||||||||||||| || ||||| || ||||||| ||||| | | |
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| T |
18046376 |
ttgatcaacattccgaagcaacataataggaacaccaaccttcagaatgagcctatgatttggcatacctgaacatttaatgtcattcaaaaactcagtt |
18046277 |
T |
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| Q |
287 |
gtcatccatcggtgatcaacccctatgtcatcatcgcatttacaaacagaatca |
340 |
Q |
| |
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|| ||||| || ||||||| || | ||| || || ||||||||||| |||||| |
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| T |
18046276 |
gtaatccaacgatgatcaagaccaaagtcgtcgtcacatttacaaactgaatca |
18046223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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