View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_2 (Length: 757)
Name: NF3425_low_2
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 1 - 670
Target Start/End: Complemental strand, 21284311 - 21283642
Alignment:
| Q |
1 |
tcacattacaacatctagtcaaactaaggtttgtctgaggaagaccaaacacataggttttcactatgattaagtttaatgggaataaacaaaatcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284311 |
tcacattacaacatctagtcaaactaaggtttgtctgaggaagaccaaacacataggttttcactatgattaagtttaatgggaataaacaaaatcaatt |
21284212 |
T |
|
| Q |
101 |
cttctcaactatggaaccaaacactaactaagaagaaaactaaatgtagcatttgaaaagtgatttccttactacatgaatttgcaatcaaaaacaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284211 |
cttctcaactatggaaccaaacactaactaagaagaaaactaaatgtagcatttgaaaagtgatttccttactacatgaatttgcaatcaaaaacaaaca |
21284112 |
T |
|
| Q |
201 |
ttgacatccaaattaagcattaatcatagatttatacaatttgatcaaagtaaagtcatagattttcacatagaaatcaaaatgtagactaattaaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284111 |
ttgacatccaaattaagcattaatcatagatttatacaatttgatcaatgtaaagtcatagattttcacatagaaatcaaaatgtagactaattaaacaa |
21284012 |
T |
|
| Q |
301 |
agaactaaaaagtatgagaagtgataccatgcaaagcagtgtgcaagcttccattgcgaatgaaatcagtgatgagaagtttctcatcactagcatagta |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21284011 |
agaactaaaaagtatgagaagcgataccatgcaaagcagtgtgcaagcttccattgcgaatgaaatcagtgatgagaagtttttcatcactagcatagta |
21283912 |
T |
|
| Q |
401 |
ataagctctcaaaggcacaacattagggtgtctcagtctcccaatagcctccacctcagcctcaaattccttaaaccgtaaaccaccatcgtcgccctca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21283911 |
ataagctctcaaaggcacaacattagggtgtctcagtctcccaatagcttccacctcagcctcaaattccttaaaccgtaaaccaccatcgtcaccctca |
21283812 |
T |
|
| Q |
501 |
ctcaaccgtctaaccgccactgtcgctgccggaacagaccctttccctccaccaacaactttataaacaatcccactcctactcttccccaccacataag |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21283811 |
ctcaaccgtctaaccgccactgtcgctgccggaacagaccctttccctccaccaacaactttataaacaatcccactcctactcttccccaccacataag |
21283712 |
T |
|
| Q |
601 |
ctgaagccctcaacaaatcctccaattccaacccaaacccttcatccacaaccacaaatctccctttctg |
670 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
21283711 |
ctgaagccctcaacaaatcctccaattccaacccaaacccttcatccaccaccacaaatctccccttctg |
21283642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 30598559 - 30598603
Alignment:
| Q |
57 |
gttttcactatgattaagtttaatgggaataaacaaaatcaattc |
101 |
Q |
| |
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||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
30598559 |
gttttcactataattaagtttaatgggaacaaccaaaatcaattc |
30598603 |
T |
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