View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_23 (Length: 391)
Name: NF3425_low_23
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 29602208 - 29602566
Alignment:
| Q |
14 |
agattccaactcaaactagtcaagatcctgtatttgtgcatgaagacacctacatccggcgacagttcacatgattgatgaacaactgtctgtccttgtt |
113 |
Q |
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| T |
29602208 |
agattccaactcaaactagtcaagatcctgtatttgtgcatgaagacacctacatccggcgacagttcacatgattgatgaacaactgtctgtcctt--- |
29602304 |
T |
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| Q |
114 |
aaaagctcggctgtattactcagtttccaaaacttgaatttggcatagtgaagtttggagattgctttagtcaaaacctggtttatgtctgtagtgnnnn |
213 |
Q |
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| T |
29602305 |
--aagctcggctgtattactcagtttccaaaacttgaatttggcatagtgaagtttggagattgctttagtcaaaacctggtttatgtgtgtagtgtttt |
29602402 |
T |
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| Q |
214 |
nnnagttgtgtacatgtatcaccaaaaattggtttgcgagattatgatttttatcgtgtttataattgggcaatccatataactaagttttaaatcataa |
313 |
Q |
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| T |
29602403 |
tttagttgtgtacatgtatcaccaaaaattggtttgcgagattatgaattttatcgtgtttataattgggcaatccatataactaagttttaaatcataa |
29602502 |
T |
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| Q |
314 |
tcatgttgcaatcttttatattgcagaaaattgcggtcaaatgccgctcatacgatctcacttg |
377 |
Q |
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| T |
29602503 |
tcatgttgcaatcttttatattgcagaaaattgcggtcaaatgccgctcatatgatctcacttg |
29602566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 29603905 - 29603838
Alignment:
| Q |
269 |
gtgtttataattgggcaatccatataactaagttttaaatcataatcatgttgcaatcttttatattg |
336 |
Q |
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| T |
29603905 |
gtgtttataattggacaacccatataactaagttgtaaatcaaattcatgttgcgatcttttatattg |
29603838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 29603987 - 29603948
Alignment:
| Q |
162 |
tgaagtttggagattgctttagtcaaaacctggtttatgt |
201 |
Q |
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| T |
29603987 |
tgaagtttggagattgctttagtaaaaacctggttcatgt |
29603948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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