View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_25 (Length: 380)
Name: NF3425_low_25
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 54220205 - 54220559
Alignment:
| Q |
18 |
catgcatcatatatatcaattccttgcaccttaatgcagagcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaatctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220205 |
catgcatcatatatatcaattccttgcaccttaatgcagagcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaatctg |
54220304 |
T |
|
| Q |
118 |
ctaacttcaaattttggtggtgtaacccatcacaaaaatgaggaatttgaaaatcaaagaagagtaagtgatcgagtccacaagtgtttccactttttcg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220305 |
ctaacttcaaattttggtggtgtaacccatcacaaaaatgaggaatttgaaaatcaaagaagagtaagtgatcgagtccacaagtgtttccactttttca |
54220404 |
T |
|
| Q |
218 |
ctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatcattcatgttacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220405 |
ctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatcattcatgttacc |
54220504 |
T |
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| Q |
318 |
cgcattatgtctttgcacatctgttgaagagattgcaccaaccatgatctgtgct |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54220505 |
cgcattatgtctttgcacatctgttgaagagattgcaccaaccatgatctatgct |
54220559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 31239859 - 31239973
Alignment:
| Q |
193 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
292 |
Q |
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|||||||| ||||||||||| || || |||||||| ||| ||||||||||||| ||||||| || |||||||||| |||||||||| |||| ||||||| |
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| T |
31239859 |
gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaagt |
31239958 |
T |
|
| Q |
293 |
cactaatcatatcat |
307 |
Q |
| |
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||||| ||||||| |
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| T |
31239959 |
tgctaatgatatcat |
31239973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 31256356 - 31256470
Alignment:
| Q |
193 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
292 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||| ||| ||||||||||||| ||||||| || |||||||||| |||||||||| |||| ||||||| |
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| T |
31256356 |
gtccacaattgtttccacttcttagccaatatggaagttcttacagcatctttcgtagggagcaatgaaagaatatgaagaagaacgccctcgggtaagt |
31256455 |
T |
|
| Q |
293 |
cactaatcatatcat |
307 |
Q |
| |
|
||||| ||||||| |
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|
| T |
31256456 |
tgctaatgatatcat |
31256470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 313
Target Start/End: Original strand, 31274780 - 31274887
Alignment:
| Q |
206 |
tccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagtcactaatcatatc |
305 |
Q |
| |
|
||||||| || ||||| | ||| ||| ||||| |||||| | |||| | |||||||||||||| ||||||||| |||||||||| |||||||| ||||| |
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| T |
31274780 |
tccacttctttgctaacacggaagttcttacaacatcttcgataggtagtaaagaaagaatatgaagaagaacaccctcaggtaaatcactaattatatc |
31274879 |
T |
|
| Q |
306 |
attcatgt |
313 |
Q |
| |
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||||||| |
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|
| T |
31274880 |
gttcatgt |
31274887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 16130691 - 16130579
Alignment:
| Q |
193 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
292 |
Q |
| |
|
||||||||||| |||||||| || |||| |||||| ||| ||||| |||||||||| |||| |||||||||||||| |||||||||| |||||||||||| |
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| T |
16130691 |
gtccacaagtgcttccacttctttgctagtatggaagttcttacaacatctttggtcgggagtaaagaaagaatatgaagaagaacggcctcaggtaagt |
16130592 |
T |
|
| Q |
293 |
cactaatcatatc |
305 |
Q |
| |
|
||||||||||||| |
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|
| T |
16130591 |
cactaatcatatc |
16130579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 16130826 - 16130769
Alignment:
| Q |
57 |
agcctttctatgtgattagatttgtgaagtagtcttccaactagatcgaagacgcaat |
114 |
Q |
| |
|
|||||||||||| || |||||||||| | ||||||||||||||||| |||| ||||| |
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|
| T |
16130826 |
agcctttctatgcgagtagatttgtgcataagtcttccaactagatctaagaggcaat |
16130769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 305
Target Start/End: Complemental strand, 17594101 - 17593989
Alignment:
| Q |
193 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
292 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |||| ||||| | |
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| T |
17594101 |
gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaatt |
17594002 |
T |
|
| Q |
293 |
cactaatcatatc |
305 |
Q |
| |
|
||||||||||||| |
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| T |
17594001 |
cactaatcatatc |
17593989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 9891799 - 9891847
Alignment:
| Q |
217 |
gctaatatggaggtttttacagcatctttggtagggactaaagaaagaa |
265 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||| ||||||| |
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| T |
9891799 |
gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa |
9891847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 305
Target Start/End: Original strand, 14729386 - 14729498
Alignment:
| Q |
193 |
gtccacaagtgtttccactttttcgctaatatggaggtttttacagcatctttggtagggactaaagaaagaatatcaagaagaacgtcctcaggtaagt |
292 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||| ||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |||| ||||| | |
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|
| T |
14729386 |
gtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaacagcctcgggtaatt |
14729485 |
T |
|
| Q |
293 |
cactaatcatatc |
305 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
14729486 |
cacttatcatatc |
14729498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 1095107 - 1095059
Alignment:
| Q |
217 |
gctaatatggaggtttttacagcatctttggtagggactaaagaaagaa |
265 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
1095107 |
gctaatatggaagttcttacagcatctttggtagggagtaacgaaagaa |
1095059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 14740784 - 14740826
Alignment:
| Q |
50 |
aatgcagagcctttctatgtgattagatttgtgaagtagtctt |
92 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||| |
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|
| T |
14740784 |
aatgcaaagcctttctatgtgattggatttgtgtagtagtctt |
14740826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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