View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_low_26 (Length: 370)
Name: NF3425_low_26
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 354
Target Start/End: Complemental strand, 12838650 - 12838319
Alignment:
| Q |
23 |
aagctagacttaattaaagctatatgtcgaaaaacacctcattaccatctttgtgttataacattaaaatcaaatttatatgcagtaaagtatattgcat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12838650 |
aagctagacttaattaaagctatatgtcgaaaaacacctcattaccatctttgcgttataacattaaaatcaaatttatatgcagtaaagtatattgcat |
12838551 |
T |
|
| Q |
123 |
caaataccgacatctctggatttgtccgcgtaacactcaaggttgtcgcgacaagagcaccggtcgtattacatcaacttcaaactgttcaagcgcaaac |
222 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12838550 |
caaatactgacatctctggatttgttcgtgtaacactcaaggttgtcgcgacaagagcaccggtcatattacatcaacttcaaactgttcaagcgcaaac |
12838451 |
T |
|
| Q |
223 |
caaggacatacaactgaaagctgctttagataattgcattgcttcatacaccaagatatcaaaagaacttatgccacaagctcagaaatgtgtagacaaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12838450 |
caaggacatacaactgaaagctgctttggataattgcattgcttcatacaccaagatatcaaaagaacttgtgccacaagctcagaaatgtgtagacaaa |
12838351 |
T |
|
| Q |
323 |
agtgattataatggtgtcaaacaaagtgcaac |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12838350 |
agtgattataatggtgtcaaacaaagtgcaac |
12838319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 354
Target Start/End: Complemental strand, 12831823 - 12831492
Alignment:
| Q |
23 |
aagctagacttaattaaagctatatgtcgaaaaacacctcattaccatctttgtgttataacattaaaatcaaatttatatgcagtaaagtatattgcat |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12831823 |
aagctagacttgattaaagctatatgtcgaaaaacacctcattaccatctttgcgttataacattaaaatcaaatttatatgcagtaaagtatattgcat |
12831724 |
T |
|
| Q |
123 |
caaataccgacatctctggatttgtccgcgtaacactcaaggttgtcgcgacaagagcaccggtcgtattacatcaacttcaaactgttcaagcgcaaac |
222 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
12831723 |
caaatactgacatctctggatttgttcgtgtaacactcaaggttgtcgcgacaagagcaccggtcatattacatcaacttcaaactgttcaagtgcaaac |
12831624 |
T |
|
| Q |
223 |
caaggacatacaactgaaagctgctttagataattgcattgcttcatacaccaagatatcaaaagaacttatgccacaagctcagaaatgtgtagacaaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12831623 |
caaggacatacaactgaaagctgctttggataattgcattgcttcatacaccaagatatcaaaagaacttgtgccacaagctcagaaatgtgtagacaaa |
12831524 |
T |
|
| Q |
323 |
agtgattataatggtgtcaaacaaagtgcaac |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12831523 |
agtgattataatggtgtcaaacaaagtgcaac |
12831492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 12812608 - 12812422
Alignment:
| Q |
167 |
gtcgcgacaagagcaccggtcgtattacatcaacttcaaactgttcaagcgcaaaccaaggacatacaactgaaagctgctttagataattgcattgctt |
266 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||||| |
|
|
| T |
12812608 |
gtcgcgacaagagcaccggtcatattaaagcaacttcaaactgttcaa-cgcaaaccaaggacatgcgactgaaagctgctttggataattgcattgctt |
12812510 |
T |
|
| Q |
267 |
catacaccaagatatcaaaagaacttatgccacaagctcagaaatgtgtagacaaaagtgattataatggtgtcaaacaaagtgcaac |
354 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12812509 |
catacaccaagatatcaaaagaacttgtgccacaagctcagaaatgtgtagacaaaagtgattataatggtgtcaagcaaagtgcaac |
12812422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University