View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_27 (Length: 369)
Name: NF3425_low_27
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 6592221 - 6591922
Alignment:
| Q |
20 |
agtgcgatggtttcaaaaatcttaatattcatgccccaaatctccaatattttctcatggagggaaaatttgaggatattagctttaagaacacttctca |
119 |
Q |
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| T |
6592221 |
agtgcgatggtttcaaaaatcttaatattcatgccccaaatctccaatattttctcatggagggaaaatttgaggatattagctttaagaacacttctca |
6592122 |
T |
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| Q |
120 |
attagctgatgtattcattaatctgtcagagaacttcgaaagcaaacaaggtagattgcatgaacgctctagcaatttggttgaattttttattcatcta |
219 |
Q |
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| T |
6592121 |
attagctgatgtattcattaatctgtcagagaactttgaaagcaaacaaggtagattgcatgaacgctctagcaatttggttgaattttttattcatcta |
6592022 |
T |
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| Q |
220 |
cctcatatacacagcctggagattcagaactattttttgaaggtataatgctcatctgattcgaaactgtttttctgtaagtataagtattaaaaacaat |
319 |
Q |
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| T |
6592021 |
cctcatatacgcagcctggagattcagaactattttttgaaggtataatgctcatctgattcgaaactgtttttctgtaagtataagtattaaaaacaat |
6591922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 273
Target Start/End: Complemental strand, 6601471 - 6601223
Alignment:
| Q |
25 |
gatggtttcaaaaatcttaatattcatgccccaaatctccaatattttctcatggagggaaaatttgaggatattagctttaagaacacttctcaattag |
124 |
Q |
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| T |
6601471 |
gatggtttcaactatcttaatatccatgccccaaatctccagttttttgacatcgggggtaaatttgaggatattagctttaagaacacttctcaattag |
6601372 |
T |
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| Q |
125 |
ctgatgtattcattaatctgtcagagaacttcgaaagcaaacaaggtagattgcatgaacgctctagcaatttggttgaattttttattcatctacctca |
224 |
Q |
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| T |
6601371 |
ctgtggtgtccattggtctctatgttaactttgaaagcagtcaaggtagattgcacggacgcactagcaatctggtcgaatttttaattcatttgcctcg |
6601272 |
T |
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| Q |
225 |
tatacacagcctggagattcagaactattttttgaaggtataatgctca |
273 |
Q |
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| T |
6601271 |
tatacaaaggctggagattcaaagctattttttgaaggtataatgctca |
6601223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 3362205 - 3362292
Alignment:
| Q |
185 |
gctctagcaatttggttgaattttttattcatctacctcatatacacagcctggagattcagaactattttttgaaggtataatgctc |
272 |
Q |
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| T |
3362205 |
gctctagcaatttgcttcgatttttcgttcatctacctcacatacaaagcctagagattcatcactattttttagaggtataatgctc |
3362292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 6591876 - 6591841
Alignment:
| Q |
328 |
atgtaatccattcactttctgtcttgtctctgctcc |
363 |
Q |
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| T |
6591876 |
atgtaatccattcactttctgtcttgtttctgctcc |
6591841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 3379227 - 3379325
Alignment:
| Q |
172 |
agattgcatgaacgctctagcaatttggttgaattttttattcatctacctcatatacacagcctggagattcagaactattttttgaaggtataatgc |
270 |
Q |
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| T |
3379227 |
agattgcacggacgctctagcaatttgctcaaatttttcgttcatcgacctcacatgcagagcctagagattggtaattattttttaaaggtataatgc |
3379325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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