View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_low_30 (Length: 349)
Name: NF3425_low_30
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 13945057 - 13945376
Alignment:
| Q |
13 |
aatatttattttatatttcttacgacatttgtatcgtgtcaacatgagatacaacatacatgtatatgtgtctagtttactgtgaaggattttctaatgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13945057 |
aatatttattttatatttcttacgacatttgtatcgtgtcaacatgagatacaacatacatgtatatgtgtctagtttaccgtgaaggattttctaatgc |
13945156 |
T |
|
| Q |
113 |
tttacttgcatcccccatctattttccattgccgctcccttttccaccgtcatgaaagtttacgacgtttccacctccgccacatttatcaccaccagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13945157 |
tttacttgcatcccccatctattttccattgccgctcccttttccaccgtcatgaaagtttacgacgtttccacctccgccacatttatcaccaccagaa |
13945256 |
T |
|
| Q |
213 |
aaatttatgacgattccacaaccacctctgtttgtattttcaccacctcctttgtttgcgttttcataggggtcgtgccagactgcacctccacctggcc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13945257 |
aaatttatgacgattccacaaccacctctgtttgtattttcatcacctcctttgtttgcgttttcataggggtcgtgccagactgcacctccacctggcc |
13945356 |
T |
|
| Q |
313 |
agattgcatggccatcaacc |
332 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13945357 |
agattgcatggccatcaacc |
13945376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 13939502 - 13939576
Alignment:
| Q |
17 |
tttattttatatttcttacgacatttg-tatcgtgtcaacatgagatacaacatacatgtatatgtgtctagttt |
90 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||| | ||| |||| |||||| |||||||||||||| ||||||||| |
|
|
| T |
13939502 |
tttattttacatttcttacaacatttgatattgcatcagcatgggatacatcatacatgtatatgcgtctagttt |
13939576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University