View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_32 (Length: 328)
Name: NF3425_low_32
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 3408020 - 3407708
Alignment:
| Q |
1 |
tttacgagtatatcaaatttagtttaaacacatcagtttgtttttattgactcaaatacctcttttaaataggattgtattcaatacaactttaacacat |
100 |
Q |
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| T |
3408020 |
tttacgagtatatcaaatttagtttaaacacatcagttt----ttattgactcaaatacctcttttaaataggattgtattcaatacaactttaacacat |
3407925 |
T |
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| Q |
101 |
tacgataaagttccctttgttnnnnnnnnggatacaattaaatcaaacaattgagctcaagtgactgacgagctctatcaaaaggcgattttttcactag |
200 |
Q |
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| T |
3407924 |
tatgataaagttccttttgttaaaaaaa-gaatacaattaaatcaaacaattgaactcaagtgactgacgagctctatcaaaaggcgattttttcacgag |
3407826 |
T |
|
| Q |
201 |
gatctgagtttgattcctgaatggaacaattgttgaccagactttacttacctcttagacgaacttcaaactatcagtaaaggtttgtggtgttggcgtt |
300 |
Q |
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| T |
3407825 |
gatctgagtttgattcctgaatggaacagttgttgaccagactttacttacctcttaaacgaacttcaaactatcagtagaggtttgtggtgttggcgtt |
3407726 |
T |
|
| Q |
301 |
gtgacttcggggtctgtg |
318 |
Q |
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| T |
3407725 |
gtgacttcggggtttgtg |
3407708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 5404443 - 5404489
Alignment:
| Q |
207 |
agtttgattcctgaatggaacaattgttgaccagactttacttacct |
253 |
Q |
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| T |
5404443 |
agtttgattcctgatgggaacaattattggccagactttacttacct |
5404489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 34964188 - 34964236
Alignment:
| Q |
206 |
gagtttgattcctgaatggaacaattgttgaccagactttacttacctc |
254 |
Q |
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| T |
34964188 |
gagttcgattcctaatgggaacaattattgaccagactttacttacctc |
34964236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 10008036 - 10007991
Alignment:
| Q |
209 |
tttgattcctgaatggaacaattgttgaccagactttacttacctc |
254 |
Q |
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| T |
10008036 |
tttgattcctggttggaacaattcttgacaagactttacttacctc |
10007991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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