View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_35 (Length: 315)
Name: NF3425_low_35
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 3408325 - 3408024
Alignment:
| Q |
17 |
agtttgaagaaacatgtgacgccattgttggaccattatatagtgtcnnnnnnn---tcctccacggccctttgaacagtgcgtgttattaatccttttc |
113 |
Q |
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| T |
3408325 |
agtttgaagaaacatgtgacgccattgttggaccattatatagtgtcaaaaaaaaaatcctccacgtccctttgaacagcgcgtgttattaatccttttc |
3408226 |
T |
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| Q |
114 |
ttggttaaaacagacaagaaagtagccatcaaccattgagatacttccattctttgttcatctcctttgaaggtagttctcaagcaacttaaaattcaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3408225 |
ttggttaaaacagacaagaaagtagccatcaaccattgagatacttccattctttgttcatctcctttgaaggtagttctcaagcaacttaaaattcaca |
3408126 |
T |
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| Q |
214 |
ttatttcccaaaatcttgatagtcaaagagtatttaataatattgtatctttatatagtttacttatttaaattttacaacattgggtattgttaccaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3408125 |
ttatttcccaaaatcttgatagtcaaagagtatttaataatattgtacctttatatagtttacttatttaaattttacaacattgggtactgttaccaat |
3408026 |
T |
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| Q |
314 |
at |
315 |
Q |
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|| |
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| T |
3408025 |
at |
3408024 |
T |
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