View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_37 (Length: 310)
Name: NF3425_low_37
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 120 - 299
Target Start/End: Complemental strand, 39703598 - 39703419
Alignment:
| Q |
120 |
ctaatgcacctttacatgatttgggtccactagcctttgttaacaatggacaatcgtggccattactaatagttgctcattccactattctatctcaact |
219 |
Q |
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| T |
39703598 |
ctaatgcaactttacatgatttgggtccactagcctttgttaacaatggacaatcgtggccattactaatagttgctcactccactattctatctcaact |
39703499 |
T |
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| Q |
220 |
gctacaactatagtcaaaattatgagcactattaaatatttgcccactaccaccactatataacacgtgatactgatgat |
299 |
Q |
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| T |
39703498 |
gctacaactatagtcaaaattatgagcactattaaatatttgcccactaccaccactatataacacgtgatactgatgat |
39703419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 39703690 - 39703623
Alignment:
| Q |
18 |
aaatttggctgtccgatgtaccaaagctcccgcatacagggtctgagaaggggtcctaccatttcggc |
85 |
Q |
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| T |
39703690 |
aaatttggcagttcgatgcactaaagctcccgcatacagagtctgagaaggggtcctaccatttcggc |
39703623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 45264419 - 45264462
Alignment:
| Q |
40 |
aaagctcccgcata--cagggtctgagaaggggtcctaccattt |
81 |
Q |
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| T |
45264419 |
aaagctcccgcatatgcagggtctgagaaggggtcccaccattt |
45264462 |
T |
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