View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_38 (Length: 307)
Name: NF3425_low_38
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 680422 - 680135
Alignment:
| Q |
20 |
atagaaggttagatttaaatgaaagatttgagtttgatagatcatcaattattttgatttcattgtgatttatatatctaaaaatgaatnnnnnnnnnga |
119 |
Q |
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| T |
680422 |
atagaaggttagatttaaatgaaagatttgagtttgatagatcatcaattattttgatttcattgtgatttatatatctaaaaatgaataaataaaaaaa |
680323 |
T |
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| Q |
120 |
aagaaa----------gaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccaccat |
209 |
Q |
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| T |
680322 |
aaaaaaaaaagaagaagaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccaccat |
680223 |
T |
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| Q |
210 |
attctcaaacctttaaacnnnnnnncaacc------gttgttgttctgctgcattgaatgaccctcaaatataccattgggaactcaa |
291 |
Q |
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| T |
680222 |
attctcaaacctttaaacaaaaaaacaaccgttgttgttgttgttctgctgcattgaatgaccctcaaatataccattgggaactcaa |
680135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 748234 - 748150
Alignment:
| Q |
124 |
aagaagtatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttaggaaataaaccccacca |
208 |
Q |
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| T |
748234 |
aagaattatttaataaatatttaaaaattgatataagaatcatgagcgtgtagaccacaccaccgttagcaaataaaccccacca |
748150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 748115 - 748068
Alignment:
| Q |
236 |
aaccgttgttgtt---ctgctgcattgaatgaccctcaaatataccat |
280 |
Q |
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| T |
748115 |
aaccgttgttgttgttctgctgcattgaatgaccctcaaatataccat |
748068 |
T |
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