View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_low_39 (Length: 298)
Name: NF3425_low_39
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 5963724 - 5963445
Alignment:
| Q |
1 |
tttgtgggttcatactttgaagctacaattgtttcgtgtcttcttcaatggacaatatttggttcgttacaaaaaccttttgcaagatgataagtctaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5963724 |
tttgtgggttcatactttgaagctacaattgtttcgtgtcttcttcaatggacaatatttggttcgttacaaaaaccttttgcaagatgataagtctaga |
5963625 |
T |
|
| Q |
101 |
cttctcttagagatcgttcatccatatgagcttcgtccattaccaccacgtgttcgtagtccccttgagttttaactcaatcaaaaaattgatgcttttg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
5963624 |
cttctcttagagaccgttcatccatatgagcttcgtccattaccgccacgtgttcgtagtcctcgtgagtttcaactcaatcaaaaagttgatgcttttg |
5963525 |
T |
|
| Q |
201 |
acaacaatggttggtggttagggcaaatcacaggtgagaagatcatcacggaagaaggtcattactataaggtgtatttc |
280 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5963524 |
acaacgatggttggtggttagggcaaatcactagtgagaagatcatcacggaagaaggtcattactataaggtgtatttc |
5963445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 30897379 - 30897581
Alignment:
| Q |
47 |
aatggacaatatttggttcgttacaaaaaccttttgcaagatgataagtctagacttctcttagagatcgttcatccatatgagcttcgtccattaccac |
146 |
Q |
| |
|
||||||||||| |||||| ||||| || ||||||| || || |||||| ||| ||| |||||| | || ||||||||||||| |||||| ||||| |
|
|
| T |
30897379 |
aatggacaatacatggttcaatacaagaatcttttgcttgaggacaagtctggacctcttgtagagaccatttatccatatgagctacgtccaacaccac |
30897478 |
T |
|
| Q |
147 |
cacgtgttcgtagtccccttgagttttaactcaatcaaaaaattgatgcttttgacaacaatggttggtggttagggcaaatcacaggtgagaagatcat |
246 |
Q |
| |
|
|||||||||||| ||| | ||| ||| |||||||||| ||| |||||||||| | || ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
30897479 |
cacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatcat |
30897578 |
T |
|
| Q |
247 |
cac |
249 |
Q |
| |
|
||| |
|
|
| T |
30897579 |
cac |
30897581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 38782649 - 38782740
Alignment:
| Q |
131 |
cttcgtccattaccaccacgtgttcgtagtccccttgagttttaactcaatcaaaaaattgatgcttttgacaacaatggttggtggttagg |
222 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||| | ||||| |||||||||||||| |||||| ||||| ||| ||||||||||| |||| |
|
|
| T |
38782649 |
cttcgtccaataccaccacatgttcgtaatcctttgaagtttaaactcaatcaaaaagttgatgtatttgataacgatggttggtgggtagg |
38782740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38782520 - 38782561
Alignment:
| Q |
1 |
tttgtgggttcatactttgaagctacaattgtttcgtgtctt |
42 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38782520 |
tttgtaggttcatactttgaagctacaattgtttcatgtctt |
38782561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38743715 - 38743675
Alignment:
| Q |
1 |
tttgtgggttcatactttgaagctacaattgtttcgtgtct |
41 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38743715 |
tttgtaggttcatactttgaagctacaattgtttcatgtct |
38743675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38788692 - 38788732
Alignment:
| Q |
1 |
tttgtgggttcatactttgaagctacaattgtttcgtgtct |
41 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
38788692 |
tttgtaggttcgtactttgaagctacaattgtttcatgtct |
38788732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University